ICEfinder

ICEfinder: a web-based tool for the detection of ICEs/IMEs of bacterial genomes

Recommended Browser: Google Chrome.

(i) Query genome

Upload a GenBank file containing one nucleotide sequence and annotation

or Upload a nucleotide sequence file in the FASTA format

The query organism: Gram-negative Gram-postive unknown

(ii) Subject dataset

1. T4SS-type ICEs/AICEs/IMEs
Integrase	Relaxase
T4CP (Type IV coupling protein)	VirB4/TraU or full T4SS (Type IV secretion system)
Rep (Replication initiator protein)	Tra (Tanslocation proteins)
oriT (Origin site of DNA transfer)
2. Accessory modules
VF (Virulence Factors)	AR (Acquired Antibiotic Resistance Determinants)