ICEberg
I. Information of IME
ICEberg ID6_IME
Name GIE492 This is a predicted IME derived from literature
Family-
OrganismKlebsiella pneumoniae KpRYC492
Size (bp)22.3 kb
GC content [Genome] (%)
Insertion siteasn-tRNA
FunctionMccE492 microcin (bacteriocin)
Species that IME can be transferred to-
Nucleotide SequenceAPGM01000001.1 (complete IME sequence in this contig)
Replicon-
Coordinates1705122 ..1727413
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1GIE492 ICEKp1 [ICE] insolico- - - -

insolico This is a putative interactioin


The graph information of GIE492 components from APGM01000001
Complete gene list of GIE492 from APGM01000001
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1KPRYC492_085051700490..1701461 [+], 972diguanylate cyclase
2KPRYC492_085101701458..1702561 [-], 1104hypothetical protein
3KPRYC492_085151702895..1703059 [-], 165ISEc16, orfB
4KPRYC492_085201703497..1704933 [+], 1437MATE family multidrug exporter
5KPRYC492_085251705299..1706573 [+], 1275integraseIntegrase 
6KPRYC492_085301707978..1709090 [+], 1113glycosyltransferase IroBVF 
7KPRYC492_085351709269..1709787 [-], 519Trilactone hydrolase IroD
8KPRYC492_085401711609..1711809 [-], 201hypothetical protein
9KPRYC492_085451713660..1714427 [+], 768MchC protein
10KPRYC492_085501714446..1714931 [+], 486putative microcin H47 activating protein
11KPRYC492_085551715057..1716331 [+], 1275microcin H47 secretion protein
12KPRYC492_085601716324..1718420 [+], 2097microcin H47 secretion/processing ATP-binding protein mchF
13KPRYC492_085651718464..1718874 [+], 411hypothetical protein
14KPRYC492_085701719070..1719762 [-], 693hypothetical protein
15KPRYC492_085751721306..1721770 [-], 465type 11 methyltransferase
16KPRYC492_085801722128..1722475 [-], 348hypothetical protein
17KPRYC492_085851722551..1722658 [-], 108hypothetical protein
18KPRYC492_085901723395..1724339 [+], 945hypothetical protein
19KPRYC492_086051727574..1729028 [-], 1455AMP nucleosidase
20KPRYC492_086101729158..1729403 [-], 246signal transduction protein PmrD
21KPRYC492_086151729676..1731298 [+], 1623putative lysophospholipase
22KPRYC492_086201731209..1732141 [-], 933hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins14Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Marcoleta AE; Berrios-Pasten C; Nunez G; Monasterio O; Lagos R (2016). Klebsiella pneumoniae Asparagine tDNAs Are Integration Hotspots for Different Genomic Islands Encoding Microcin E492 Production Determinants and Other Putative Virulence Factors Present in Hypervirulent Strains. Front Microbiol. 0.88125. [PudMed:27375573]
 

Genomics & Bioinformatics Group in MML, SJTU