 ICEberg ID | 238_IME |
Name  | tISCpe8  |
| Family | - |
| Organism | Clostridium perfringens |
| Size (bp) | 1964 bp |
| GC content [Genome] (%) | |
| Insertion site | AT-rich regions |
| Function | lnu(P) (lincomycin) |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | FJ589781 (complete IME sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..1964 |
| Putative oriT region | - |
| Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | tISCpe8 | Tn916 [ICE] | in trans | Clostridium perfringens JIR4225 | Clostridium perfringens JIR4394 | 19684139 |
| This is an interactioin derived from experimental literature |
The graph information of tISCpe8 components from FJ589781 | |||||
 | |||||
| Complete gene list of tISCpe8 from FJ589781 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | tnp | 101..1147 [+], 1047 | transposase | ||
| 2 | - | 1303..1803 [+], 501 | lincosamide nucleotidyltransferase | ||
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381] |
| (3) Lyras D; Adams V; Ballard SA; Teng WL; Howarth PM; Crellin PK; Bannam TL; Songer JG; Rood JI (2009). tISCpe8, an IS1595-family lincomycin resistance element located on a conjugative plasmid in Clostridium perfringens. J Bacteriol. 191(20):6345-51. [PudMed:19684139] |