ICEberg
I. Information of CIME
ICEberg ID233_CIME
NameTn5398 This CIME is derived from experimental literature
Family-
OrganismClostridium difficile 630
Size (bp)9630
GC content [Genome] (%)
Insertion site
Function-
Species that CIME can be transferred toClostridium difficile
Nucleotide SequenceAF109075 (complete CIME sequence in this contig)
Replicon-
Coordinates3109..12738


II. CIME interaction with ICE/IME

The Interaction Network among ICE/IME/CIME


Detailed Informatioin of the Interaction Network
# CIME Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1Tn5398 Tn5397 [ICE] insolicoin cis - - -

insolico This is a putative interactioin


The graph information of Tn5398 components from AF109075
Complete gene list of Tn5398 from AF109075
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1ilvD1..1040 [+], 1040IlvD
2hydR1384..2013 [+], 630HydR
3hydD2039..2851 [+], 813HydD
4-4213..4308 [+], 96erm leader peptide
5erm1B4433..5170 [+], 738rRNA methyltransferase Erm1B
6-5175..5306 [+], 132unknown
7-5703..6599 [+], 897unknown
8erm2B6840..7577 [+], 738rRNA methyltransferase Erm2BAR 
9-7582..7713 [+], 132unknown
10-8728..9123 [+], 396unknownOrf13_Tn, T4SS component 
11effR9260..9913 [+], 654EffR
12effD10002..11324 [+], 1323EffD
13-11735..12094 [-], 360unknown
14-12414..12812 [+], 399unknown
15ispD12981..13919 [+], 939IspD
16flxD14395..14823 [+], 429FlxD
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins10Fasta
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Genomics & Bioinformatics Group in MML, SJTU