 ICEberg ID | 232_CIME |
| Name | TR1  |
| Family | - |
| Organism | Streptomyces scabiei 87.22 |
| Size (bp) | 20089 |
| GC content [Genome] (%) | |
| Insertion site | TTGAAGCGGAAC/TTGAAGCGGAAC |
| Function | - |
| Species that CIME can be transferred to | Streptomyces diastatochromogenes |
| Nucleotide Sequence | NC_013929 (complete CIME sequence in this genome) |
| Replicon | - |
| Genome coordinates | 3597603..3617691 |
The Interaction Network among ICE/IME/CIME | ||||||
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| Detailed Informatioin of the Interaction Network | ||||||
| # | CIME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | TR1 | TR2 [ICE] | in cis | Streptomyces scabiei | Streptomyces diastatochromogenes | 27977935 |
| This is an interactioin derived from experimental literature |
The graph information of TR1 components from NC_013929 | |||||
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| Complete gene list of TR1 from NC_013929 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | SCAB_RS15045 | 3593375..3594493 [-], 1119 | DUF4190 domain-containing protein | ||
| 2 | SCAB_RS15050 | 3594870..3595979 [+], 1110 | pyridoxal-5'-phosphate-dependent protein subunit beta | ||
| 3 | SCAB_RS15055 | 3596279..3596659 [+], 381 | hypothetical protein | ||
| 4 | SCAB_RS15060 | 3597090..3597530 [+], 441 | hypothetical protein | ||
| 5 | SCAB_RS15070 | 3598108..3599295 [-], 1188 | cytochrome P450 | ||
| 6 | SCAB_RS15075 | 3600056..3600253 [-], 198 | protein mbtH | ||
| 7 | SCAB_RS15080 | 3600343..3604809 [-], 4467 | non-ribosomal peptide synthetase | ||
| 8 | SCAB_RS15085 | 3604857..3609233 [-], 4377 | non-ribosomal peptide synthetase | ||
| 9 | SCAB_RS15090 | 3611115..3611753 [+], 639 | helix-turn-helix domain-containing protein | ||
| 10 | txtE | 3613916..3615136 [+], 1221 | 4-nitrotryptophan synthase | ||
| 11 | SCAB_RS15100 | 3615200..3616372 [+], 1173 | nitric oxide synthase oxygenase | ||
| 12 | SCAB_RS15110 | 3617139..3617423 [-], 285 | hypothetical protein | ||
| 13 | SCAB_RS44845 | 3617834..3618586 [-], 753 | site-specific integrase | ||
| 14 | SCAB_RS15120 | 3619118..3619351 [-], 234 | DNA-binding protein | ||
| 15 | SCAB_RS15125 | 3620559..3620882 [+], 324 | divalent-cation tolerance protein CutA | ||
| 16 | SCAB_RS15130 | 3620941..3622182 [-], 1242 | XRE family transcriptional regulator | ||
 Flanking regions |
(1) Zhang Y; Loria R (2017). Emergence of Novel Pathogenic Streptomyces Species by Site-Specific Accretion and cis-Mobilization of Pathogenicity Islands. Mol Plant Microbe Interact. 30(1):72-82. [PudMed:27977935] 
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(2) Chapleau M; Guertin JF; Farrokhi A; Lerat S; Burrus V; Beaulieu C (2016). Identification of genetic and environmental factors stimulating excision from Streptomyces scabiei chromosome of the toxicogenic region responsible for pathogenicity. Mol Plant Pathol. 17(4):501-9. [PudMed:26177341]
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| experimental literature |
| in silico analysis literature |