 ICEberg ID | 226_CIME |
| Name | CIME19258  |
| Family | - |
| Organism | Streptococcus thermophilus ATCC 19258 |
| Size (bp) | 14999 |
| GC content [Genome] (%) | |
| Insertion site | fda |
| Function | - |
| Species that CIME can be transferred to | - |
| Nucleotide Sequence | AJ586571 (complete CIME sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 154..15152 |
The Interaction Network among ICE/IME/CIME | ||||||
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| Detailed Informatioin of the Interaction Network | ||||||
| # | CIME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | CIME19258 | ICESt3 [ICE] | in cis | - | - | - |
| This is a putative interactioin |
The graph information of CIME19258 components from AJ586571 | |||||
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| Complete gene list of CIME19258 from AJ586571 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | int | 553..1749 [-], 1197 | putative tyrosine integrase | Integrase | |
| 2 | xis | 1829..2032 [-], 204 | putative excisionase | ||
| 3 | - | 2422..2652 [-], 231 | putative transcriptionnal regulator | ||
| 4 | cadA | 3430..5553 [-], 2124 | cadmium efflux ATPase | ||
| 5 | - | 5774..6283 [+], 510 | putative lipoprotein signal peptidase | ||
| 6 | cadC | 6454..6789 [-], 336 | putative cadmium efflux system regulator protein | ||
| 7 | - | 7857..8105 [-], 249 | hypothetical protein | ||
| 8 | - | 8168..9424 [-], 1257 | putative permease | ||
| 9 | - | 9454..9726 [-], 273 | hypothetical protein | ||
| 10 | tnp1198 | 10025..11029 [+], 1005 | IS1198 transposase | ||
| 11 | - | 11738..12040 [-], 303 | hypothetical protein | ||
| 12 | - | 12030..12395 [-], 366 | hypothetical protein | ||
| 13 | - | 15133..15270 [-], 138 | putative fructose-1,6-diphosphate aldolase | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
(1) Bellanger X; Morel C; Gonot F; Puymege A; Decaris B; Guedon G (2011). Site-specific accretion of an integrative conjugative element together with a related genomic island leads to cis mobilization and gene capture. Mol Microbiol. 81(4):912-25. [PudMed:21722203] 
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(2) Pavlovic G; Burrus V; Gintz B; Decaris B; Guedon G (2004). Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PudMed:15073287]
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| experimental literature |