ICEberg
I. Information of CIME
ICEberg ID226_CIME
NameCIME19258 This is a predicted CIME derived from literature
Family-
OrganismStreptococcus thermophilus ATCC 19258
Size (bp)14999
GC content [Genome] (%)
Insertion sitefda
Function-
Species that CIME can be transferred to-
Nucleotide SequenceAJ586571 (complete CIME sequence in this GenBank file)
Replicon-
Coordinates154..15152


II. CIME interaction with ICE/IME

The Interaction Network among ICE/IME/CIME


Detailed Informatioin of the Interaction Network
# CIME Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1CIME19258 ICESt3 [ICE] insolicoin cis - - -

insolico This is a putative interactioin


The graph information of CIME19258 components from AJ586571
Complete gene list of CIME19258 from AJ586571
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1int553..1749 [-], 1197putative tyrosine integraseIntegrase 
2xis1829..2032 [-], 204putative excisionase
3-2422..2652 [-], 231putative transcriptionnal regulator
4cadA3430..5553 [-], 2124cadmium efflux ATPase
5-5774..6283 [+], 510putative lipoprotein signal peptidase
6cadC6454..6789 [-], 336putative cadmium efflux system regulator protein
7-7857..8105 [-], 249hypothetical protein
8-8168..9424 [-], 1257putative permease
9-9454..9726 [-], 273hypothetical protein
10tnp119810025..11029 [+], 1005IS1198 transposase
11-11738..12040 [-], 303hypothetical protein
12-12030..12395 [-], 366hypothetical protein
13-15133..15270 [-], 138putative fructose-1,6-diphosphate aldolase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins12Fasta
(1) Bellanger X; Morel C; Gonot F; Puymege A; Decaris B; Guedon G (2011). Site-specific accretion of an integrative conjugative element together with a related genomic island leads to cis mobilization and gene capture. Mol Microbiol. 81(4):912-25. [PudMed:21722203] experimental
(2) Pavlovic G; Burrus V; Gintz B; Decaris B; Guedon G (2004). Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PudMed:15073287] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU