ICEberg
I. Information of CIME
ICEberg ID169_CIME
NameCIME_Nem316_tRNALys This CIME is derived from experimental literature
Family-
OrganismStreptococcus agalactiae NEM316
Size (bp)15841
GC content [Genome] (%)
Insertion sitetRNALys
Function-
Species that CIME can be transferred to-
Nucleotide SequenceNC_004368 (complete CIME sequence in this genome)
Replicon-
Genome coordinates491761..507602


II. CIME interaction with ICE/IME

The Interaction Network among ICE/IME/CIME


Detailed Informatioin of the Interaction Network
# CIME Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1CIME_Nem316_tRNALys ICE_515_tRNALys [ICE] experimentalin cis Streptococcus agalactiae Streptococcus agalactiae; Streptococcus pyogenes 23275243

experimental This is an interactioin derived from experimental literature

 

The gene information of is not available.
ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) Zhang Y; Loria R (2017). Emergence of Novel Pathogenic Streptomyces Species by Site-Specific Accretion and cis-Mobilization of Pathogenicity Islands. Mol Plant Microbe Interact. 30(1):72-82. [PudMed:27977935] experimental in_silico
(2) Puymege A; Bertin S; Chuzeville S; Guedon G; Payot S (2013). Conjugative transfer and cis-mobilization of a genomic island by an integrative and conjugative element of Streptococcus agalactiae. J Bacteriol. 195(6):1142-51. [PudMed:23275243]
(3) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU