ICEberg
I. Information of ICE
ICEberg ID85
Name ICESpn11930-2 This is a predicted ICE derived from literature
OrganismStreptococcus pneumoniae 11930
Size (bp)25645
GC content [Genome] (%)37.52
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671416 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..25645 
Putative oriT region coordinates: 2166..2298;   oriTDB id:  200001
ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACATTAGAAAATCC
TTTGGTTATAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTAAAAGTTGACATAC
Putative relaxase coordinates: 2309..3727; Gene: orf20;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpn11930-2 is not available.



The graph information of ICESpn11930-2 components from FR671416
Complete gene list of ICESpn11930-2 from FR671416
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1orf231..315 [+], 315conjugative transposon protein
2orf22331..717 [+], 387conjugative transposon protein
3orf21746..2131 [+], 1386conjugative transposon FtsK/SpoIIIE-family proteinOrf21_Tn, T4SS component 
4orf202309..3727 [+], 1419putative conjugative transposon replication initiation factorRelaxase, MOBT Family
5ermB3984..4721 [+], 738rRNA methylase
6-4978..6225 [-], 1248Transposase
7orf196459..6626 [+], 168conjugative transposon proteinOrf19_Tn, T4SS component 
8orf186743..7240 [+], 498conjugative transposon protein
9orf177491..7721 [+], 231putative conjugative transposon membrane proteinOrf17_Tn, T4SS component 
10orf167705..10152 [+], 2448conjugative transposon ATP/GTP-binding proteinOrf16_Tn, T4SS component 
11orf1510221..12332 [+], 2112conjugative transposon membrane proteinOrf15_Tn, T4SS component 
12orf1412329..13330 [+], 1002putative cell wall hydrolaseOrf14_Tn, T4SS component 
13orf1313327..14262 [+], 936putative conjugative transposon exported proteinOrf13_Tn, T4SS component 
14tetM14624..16558 [+], 1935conjugative transposon tetracycline resistance protein
15orf916907..22528 [-], 5622putative conjugative transposon regulatory protein (pseudogene)
16ermB17665..18402 [+], 738rRNA methylase
17tnpR18757..19311 [+], 555Resolvase
18-19315..22233 [+], 2919Transposase
19SPN23F1306122658..22804 [+], 147putative uncharacterized protein
20orf723033..23455 [+], 423putative conjugative transposon regulatory protein
21xis24143..24346 [+], 204excisionase
22int24428..25645 [+], 1218putative integraseIntegrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PubMed:21273480] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU