ICEberg
I. Information of ICE
ICEberg ID83
Name ICESpn23771 This is a predicted ICE derived from literature
OrganismStreptococcus pneumoniae 23771
Size (bp)25880
GC content [Genome] (%)38.02
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671415 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..25880 
Putative oriT region coordinates: 2166..2298;   oriTDB id:  200001
ACTTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGTCAAAAAAACATTAGAAAATCC
TTTGGTTACAAGGGATTTACAAAATTTCAGCGTATGTCAAATGGGCTTTAAAAGTTGACATAC
Putative relaxase coordinates: 2309..3727; Gene: orf20;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpn23771 is not available.



The graph information of ICESpn23771 components from FR671415
Complete gene list of ICESpn23771 from FR671415
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1orf231..315 [+], 315conjugative transposon protein
2orf22334..717 [+], 384conjugative transposon protein
3orf21746..2131 [+], 1386conjugative transposon FtsK/SpoIIIE-family proteinOrf21_Tn, T4SS component 
4orf202309..3727 [+], 1419putative conjugative transposon replication initiation factorRelaxase, MOBT Family
5ermB3984..4721 [+], 738rRNA methylase
6-4978..6225 [-], 1248Transposase
7orf196405..6626 [+], 222conjugative transposon proteinOrf19_Tn, T4SS component 
8orf186743..7240 [+], 498conjugative transposon protein
9orf177491..7721 [+], 231putative conjugative transposon membrane proteinOrf17_Tn, T4SS component 
10orf167705..10152 [+], 2448conjugative transposon ATP/GTP-binding proteinOrf16_Tn, T4SS component 
11orf1510155..12332 [+], 2178conjugative transposon membrane proteinOrf15_Tn, T4SS component 
12orf1412329..13330 [+], 1002putative cell wall hydrolaseOrf14_Tn, T4SS component 
13orf1313345..14259 [+], 915putative conjugative transposon exported proteinOrf13_Tn, T4SS component 
14tetM14636..16555 [+], 1920conjugative transposon tetracycline resistance protein
15-16767..17164 [+], 398UmuC/MucB-like protein
16-17161..17496 [+], 336ImsC-like protein
17-17509..17877 [+], 369YolD domain protein
18mel18281..19744 [-], 1464ABC transporter ATPase subunit
19mef19864..21081 [-], 1218Macrolide efflux transporter
20orf922410..22763 [-], 354putative conjugative transposon regulatory protein
21SPN23F1306122893..23039 [+], 147putative uncharacterized protein
22orf723268..23690 [+], 423putative conjugative transposon regulatory protein
23xis24378..24581 [+], 204excisionase
24Integrase24663..25880 [+], 1218putative integrase (pseudogene)Integrase 
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PubMed:21273480] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU