 ICEberg ID | 747 |
Name  | ICE_SsaL22_fda  |
| Organism | Streptococcus salivarius L22 |
| Size (bp) | 37,240 |
| GC content [Genome] (%) | 35.06 |
| Insertion site | fda |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | LT622831 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 1..37240 |
| Putative oriT region | coordinates: 24205..24417; oriTDB id: 200003 GCCTGACCACAGGTCAGGCGCAGACCGTAGCCCGAAGTTCCTAGGCCATGATGAGACTTCAACCCCCGAT TTCTAATAGGGGGGTTACATTTGGCCAAAGTGCCACGTCCACCCCTCCTCATTCCTTGTGGGAGTTGGGA TTTCAAGATTTAGAAAGTGTGTCACTTTGGTCCAAAAAGTGTGTCACTTAATTAAAAGGAGGTGTTCCTA TGA |
| Putative relaxase | coordinates: 24418..25650; Gene: ORFJ; Family: MOBT |
The graph information of ICE_SsaL22_fda components from LT622831 | |||||
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| Complete gene list of ICE_SsaL22_fda from LT622831 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | slvF | 713..1390 [+], 678 | Putative lantibiotic transport ATP-binding protein SlvF | ||
| 2 | slvE | 1392..2120 [+], 729 | Putative lantibiotic transport membrane protein SlvE | ||
| 3 | slvG | 2107..2757 [+], 651 | Putative lantibiotic transport protein SlvG | ||
| 4 | tnp | 3615..4196 [-], 582 | transposase | ||
| 5 | slvK | 4986..6323 [-], 1338 | Putative sensor histidine kinase SlvK | ||
| 6 | slvR | 6316..7002 [-], 687 | Putative response regulator SlvR | ||
| 7 | slvP | 6995..8593 [-], 1599 | Putative serine protease SlvP | ||
| 8 | slvI | 8595..9329 [-], 735 | Putative immunity protein SlvI | ||
| 9 | slvC | 9342..10562 [-], 1221 | Putative lantibiotic cyclase SlvC | ||
| 10 | slvT | 10519..12357 [-], 1839 | Putative ABC transporter SlvT | ||
| 11 | slvB | 12367..15321 [-], 2955 | Putative lantibiotic dehydratase SlvB | ||
| 12 | slvN | 15433..15594 [-], 162 | Salivaricin N | ||
| 13 | slvD | 15837..16010 [-], 174 | Salivaricin D | ||
| 14 | slvD | 16207..16380 [-], 174 | Salivaricin D | ||
| 15 | tnp | 16756..16917 [+], 162 | transposase, partial | ||
| 16 | tnp | 17027..17188 [+], 162 | transposase, partial | ||
| 17 | tnp | 17341..17610 [+], 270 | transposase, partial | ||
| 18 | arp1 | 17811..18509 [-], 699 | putative transcriptional regulator Arp1 | ||
| 19 | ORFQ | 18518..19378 [-], 861 | putative ImmA protease | ||
| 20 | - | 19493..20530 [-], 1038 | hypothetical protein | ||
| 21 | arp2 | 20514..20855 [-], 342 | Putative transcriptional regulator Arp2 | ||
| 22 | ORFO | 21444..21473 [+], 30 | conserved protein of unknown function | ||
| 23 | ORFN | 21508..21690 [+], 183 | conserved protein of unknown function | ||
| 24 | ORFM | 21729..22025 [+], 297 | Putative conjugal transfer protein | ||
| 25 | ORFL | 22047..22508 [+], 462 | Putative conjugal transfer protein | ||
| 26 | ORFK | 22522..24210 [+], 1689 | FtsK/SpoIIIE family coupling protein | YdcQ, T4SS component | |
| 27 | ORFJ | 24418..25650 [+], 1233 | Putative relaxase | Relaxase, MOBT Family | |
| 28 | ORFI | 25665..25895 [+], 231 | Putative conjugal transfer protein | ||
| 29 | ORFH | 25900..26457 [+], 558 | Putative conjugal transfer protein | ||
| 30 | ORFG | 26469..27464 [+], 996 | Putative conjugal transfer protein | ||
| 31 | ORFF | 27474..27698 [+], 225 | Putative conjugal transfer protein | ||
| 32 | ORFE | 27701..28111 [+], 411 | Putative conjugal transfer protein | YddD, T4SS component | |
| 33 | ORFD | 28125..30629 [+], 2505 | - | YddE, T4SS component | |
| 34 | ORFC | 30641..32521 [+], 1881 | Putative conjugal transfer protein | YddG, T4SS component | |
| 35 | ORFB | 32523..32747 [+], 225 | Putative conjugal transfer protein | ||
| 36 | ORFA | 32764..33876 [+], 1113 | Putative conjugal transfer protein | Orf13_p, T4SS component | |
| 37 | - | 33977..35179 [+], 1203 | hypothetical protein | ||
| 38 | xis | 35563..35811 [+], 249 | Excisionase | ||
| 39 | int | 35811..37157 [+], 1347 | Tyrosine integrase | Integrase | |
 Gene may contribute to site-specific recombination |
(1) Dahmane N; Libante V; Charron-Bourgoin F; Guedon E; Guedon G; Leblond-Bourget N; Payot S (2017). Diversity of Integrative and Conjugative Elements of Streptococcus salivarius and Their Intra- and Interspecies Transfer. Appl Environ Microbiol. 83(13). [PubMed:28432093] 
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| experimental literature |
| in silico analysis literature |