 ICEberg ID | 364 |
Name  | Tn5253  |
| Organism | Streptococcus pneumoniae DP1322 |
| Size (bp) | 64528 |
| GC content [Genome] (%) | 35.46 |
| Insertion site | - |
| Function | - |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | EU351020 (complete ICE sequence in this GenBank file) |
| Replicon | - |
| Coordinates | 833..65360 |
| Putative oriT region | coordinates: 32531..32663; oriTDB id: 200001 GTATGTCAACTTTTAAAGCCCATTTGACATACGCTGAAATTTTGTAAATCCCTTGTAACCAAAGGATTTT CTAATGTTTTTTTGACTGTTTCCTGTCGATTTGTACCCCCCTGTTAGATACGGGGGGTTAAGT |
| Putative relaxase | coordinates: 31315..32520; Family: MOBT |
The graph information of Tn5253 components from EU351020 | |||||
 | |||||
| Complete gene list of Tn5253 from EU351020 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
| 1 | spr1042 | 1..353 [+], 353 | IgA-specific zinc metalloproteinase | ||
| 2 | - | 1070..1243 [+], 174 | unknown | ||
| 3 | repA | 1240..2019 [+], 780 | RepA | ||
| 4 | - | 2020..2121 [+], 102 | unknown | ||
| 5 | - | 2118..3476 [+], 1359 | methyltransferase | ||
| 6 | - | 3460..3909 [+], 450 | unknown | ||
| 7 | - | 3902..4282 [+], 381 | unknown | ||
| 8 | - | 4295..4528 [+], 234 | unknown | ||
| 9 | - | 4531..5118 [+], 588 | putative protease | ||
| 10 | - | 5246..5836 [+], 591 | abortive infection protein AbiEi | ||
| 11 | - | 5836..6672 [+], 837 | abortive infection protein AbiEii | ||
| 12 | - | 6955..7254 [+], 300 | unknown | ||
| 13 | - | 7244..7732 [+], 489 | unknown | ||
| 14 | traG | 7732..9609 [+], 1878 | TraG protein | ||
| 15 | - | 9630..9872 [+], 243 | unknown | ||
| 16 | - | 9889..10743 [+], 855 | unknown | PrgH, T4SS component | |
| 17 | - | 10797..11156 [+], 360 | unknown | ||
| 18 | virB4 | 11107..13464 [+], 2358 | type IV secretion protein VirB4 | PrgJ, T4SS component | |
| 19 | - | 13476..16289 [+], 2814 | putative peptidoglycan hydrolase | PrgK, T4SS component | |
| 20 | - | 16341..16469 [+], 129 | unknown | ||
| 21 | - | 16591..16785 [-], 195 | truncated ISSth5 transposase | ||
| 22 | int | 17306..18523 [-], 1218 | integrase | Integrase | |
| 23 | xis | 18605..18808 [-], 204 | excisionase | ||
| 24 | - | 18792..19043 [+], 252 | unknown | ||
| 25 | - | 19269..19499 [-], 231 | unknown | ||
| 26 | - | 19496..19918 [-], 423 | putative sigma factor | ||
| 27 | - | 20147..20293 [-], 147 | unknown | ||
| 28 | - | 20423..20776 [+], 354 | putative transcriptional regulator | ||
| 29 | - | 20836..21024 [-], 189 | unknown | ||
| 30 | tet(M) | 21122..23041 [-], 1920 | tetracycline resistance protein Tet(M) | ||
| 31 | - | 23057..23143 [-], 87 | tet(M) leader peptide | ||
| 32 | - | 23418..24350 [-], 933 | unknown | Orf13_Tn, T4SS component | |
| 33 | - | 24347..25348 [-], 1002 | putative cell wall hydrolase | Orf14_Tn, T4SS component | |
| 34 | - | 25345..27522 [-], 2178 | unknown | Orf15_Tn, T4SS component | |
| 35 | virB4 | 27525..29972 [-], 2448 | type IV secretion protein VirB4 | Orf16_Tn, T4SS component | |
| 36 | - | 29956..30462 [-], 507 | unknown | Orf17_Tn, T4SS component | |
| 37 | ardA | 30437..30934 [-], 498 | antirestriction protein ArdA | ||
| 38 | - | 31051..31272 [-], 222 | unknown | Orf19_Tn, T4SS component | |
| 39 | - | 31315..32520 [-], 1206 | relaxase | Relaxase, MOBT Family | |
| 40 | - | 32698..34083 [-], 1386 | putative FtsK-SpoIIIE family protein | Orf21_Tn, T4SS component | |
| 41 | - | 34112..34495 [-], 384 | unknown | ||
| 42 | - | 34514..34828 [-], 315 | unknown | ||
| 43 | - | 34851..34970 [-], 120 | unknown | ||
| 44 | - | 35267..35998 [+], 732 | putative ATP-binding protein | ||
| 45 | - | 36016..37332 [+], 1317 | putative permease protein | ||
| 46 | - | 37388..37492 [-], 105 | unknown | ||
| 47 | - | 37763..38173 [+], 411 | unknown | ||
| 48 | - | 38221..44307 [+], 6087 | putative restriction-modification protein | ||
| 49 | - | 44382..44666 [+], 285 | unknown | ||
| 50 | - | 44680..44976 [+], 297 | unknown | ||
| 51 | - | 44990..45187 [-], 198 | unknown | ||
| 52 | - | 45347..45988 [+], 642 | unknown | PrgL, T4SS component | |
| 53 | - | 45998..47083 [+], 1086 | unknown | ||
| 54 | - | 47134..47367 [+], 234 | unknown | ||
| 55 | - | 47364..47747 [+], 384 | unknown | ||
| 56 | - | 47785..48057 [+], 273 | unknown | ||
| 57 | pezA | 48125..48601 [+], 477 | antitoxin PezA | ||
| 58 | pezT | 48601..49359 [+], 759 | toxin PezT | ||
| 59 | - | 49835..50623 [+], 789 | unknown | ||
| 60 | - | 50862..51110 [+], 249 | unknown | ||
| 61 | - | 51281..51931 [+], 651 | chloramphenicol acetyl transferase CAT | ||
| 62 | - | 52236..52325 [-], 90 | unknown | ||
| 63 | - | 52442..52666 [-], 225 | unknown | ||
| 64 | - | 52796..53641 [-], 846 | replication protein | ||
| 65 | - | 53657..53926 [+], 270 | unknown | ||
| 66 | - | 54016..54753 [+], 738 | truncated neopullulanase | ||
| 67 | - | 54832..55476 [+], 645 | unknown | ||
| 68 | pezA | 55752..56228 [+], 477 | antitoxin PezA | ||
| 69 | pezT | 56228..56998 [+], 771 | toxin PezT | ||
| 70 | umuD | 57255..57938 [+], 684 | UV resistance protein UmuD | ||
| 71 | umuC | 57941..59356 [+], 1416 | UV resistance protein UmuC | ||
| 72 | - | 59410..59718 [+], 309 | unknown | ||
| 73 | - | 59708..59998 [+], 291 | unknown | ||
| 74 | - | 60293..60649 [+], 357 | unknown | ||
| 75 | - | 60654..61019 [+], 366 | mobilization protein MobC | ||
| 76 | - | 61006..62835 [+], 1830 | relaxase | ||
| 77 | - | 62939..63166 [+], 228 | putative transcriptional regulator | ||
| 78 | - | 63214..63393 [-], 180 | unknown | ||
| 79 | xis | 63433..63666 [+], 234 | excisionase | ||
| 80 | int | 63751..65259 [+], 1509 | integrase | ||
| 81 | spr1043 | 65341..66192 [+], 852 | ribosomal biogenesis GTPase | ||
 Flanking regions |
| - |