ICEberg ID | 128 |
Name | ICEDdaEch586-1 |
Organism | Dickeya dadantii Ech586 |
Size (bp) | 51067 |
GC content [Genome] (%) | 48.09[53.64] |
Insertion site | tRNA-asn(Dd586_R0052) |
Function | - |
Species that ICE can be transferred to | - |
Nucleotide Sequence | CP001836 (complete ICE sequence in this genome) |
Replicon | chromosome (4818394 bp, BioProject:42519) [NC_013592] |
Genome coordinates | 2972027..3023093 |
Putative oriT region | coordinates: 3010188..3010310; oriTDB id: 200013 CCGATCAGGCGCGACCAACCCCTTTAAAGCAGCGTTCCCGTTTTTTGGAGCTTGCGAGAAAAAACAGGCG AAACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGGGCGACGGTGTGCCGCC |
Putative relaxase | - |
The graph information of ICEDdaEch586-1 components from CP001836 | |||||
Complete gene list of ICEDdaEch586-1 from CP001836 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | Dd586_2633 | 2967367..2968440 [+], 1074 | transcriptional regulator, LacI family | ||
2 | Dd586_2634 | 2968629..2971739 [+], 3111 | glycoside hydrolase family 2 TIM barrel | ||
3 | Dd586_2635 | 2972189..2973460 [+], 1272 | integrase family protein | Integrase | |
4 | Dd586_2637 | 2973922..2974164 [-], 243 | twin-arginine translocation protein, TatA/E family subunit | ||
5 | Dd586_2638 | 2974312..2975388 [-], 1077 | conserved hypothetical protein | ||
6 | Dd586_2639 | 2975451..2975828 [-], 378 | protein of unknown function DUF1330 | ||
7 | Dd586_2640 | 2976019..2976912 [-], 894 | transcriptional regulator, LysR family | ||
8 | Dd586_2641 | 2977397..2978092 [+], 696 | two component transcriptional regulator, winged helix family | ||
9 | Dd586_2642 | 2978101..2979489 [+], 1389 | multi-sensor signal transduction histidine kinase | ||
10 | Dd586_2643 | 2979581..2979835 [-], 255 | protein of unknown function DUF1471 | ||
11 | Dd586_2644 | 2980141..2981265 [+], 1125 | dienelactone hydrolase | ||
12 | Dd586_2645 | 2981371..2982030 [+], 660 | flavodoxin | ||
13 | Dd586_2646 | 2982051..2982737 [+], 687 | conserved hypothetical protein | ||
14 | Dd586_2647 | 2982878..2983621 [-], 744 | NAD(P)H dehydrogenase (quinone) | ||
15 | Dd586_2648 | 2983646..2984407 [-], 762 | short-chain dehydrogenase/reductase SDR | ||
16 | Dd586_2649 | 2984611..2985753 [-], 1143 | NADH:flavin oxidoreductase/NADH oxidase | ||
17 | Dd586_2650 | 2986038..2986676 [-], 639 | flavodoxin/nitric oxide synthase | ||
18 | Dd586_2651 | 2986814..2987827 [-], 1014 | Alcohol dehydrogenase zinc-binding domain protein | ||
19 | Dd586_2652 | 2988178..2989173 [+], 996 | aldo/keto reductase | ||
20 | Dd586_2653 | 2989300..2989977 [-], 678 | NAD(P)H dehydrogenase (quinone) | ||
21 | Dd586_2654 | 2990289..2990882 [-], 594 | NAD(P)H dehydrogenase (quinone) | ||
22 | Dd586_2655 | 2991101..2992003 [+], 903 | transcriptional regulator, AraC family | ||
23 | Dd586_2657 | 2992682..2993596 [+], 915 | conserved hypothetical protein | ||
24 | Dd586_2658 | 2993749..2993943 [+], 195 | phage transcriptional regulator, AlpA | ||
25 | Dd586_2659 | 2993958..2994542 [+], 585 | conserved hypothetical protein | ||
26 | Dd586_2660 | 2994532..2994735 [+], 204 | transcriptional regulator, TraR/DksA family | ||
27 | Dd586_2661 | 2994911..2995762 [-], 852 | transcriptional regulator, LysR family | ||
28 | Dd586_2662 | 2995862..2996725 [+], 864 | protein of unknown function DUF6 transmembrane | ||
29 | Dd586_2663 | 2997209..2997442 [+], 234 | conserved hypothetical protein | ||
30 | Dd586_2664 | 2997519..2998226 [+], 708 | Lytic transglycosylase catalytic | VirB1, T4SS component | |
31 | Dd586_2665 | 2998226..2998519 [+], 294 | Conjugal transfer protein TrbC | VirB2, T4SS component | |
32 | Dd586_2666 | 2998530..3001274 [+], 2745 | CagE, TrbE, VirB component of type IV transporter system, conserved region | VirB4, T4SS component | |
33 | Dd586_2667 | 3001295..3001999 [+], 705 | type IV secretion system family protein | VirB5, T4SS component | |
34 | Dd586_2668 | 3002011..3002235 [+], 225 | conserved hypothetical protein | MagB05, T4SS component | |
35 | Dd586_2669 | 3002246..3003310 [+], 1065 | TrbL/VirB6 plasmid conjugal transfer protein | VirB6, T4SS component | |
36 | Dd586_2670 | 3003394..3003531 [+], 138 | conserved hypothetical protein | VirB7, T4SS component | |
37 | Dd586_2671 | 3003524..3004207 [+], 684 | VirB8 family protein | VirB8, T4SS component | |
38 | Dd586_2672 | 3004207..3005112 [+], 906 | P-type conjugative transfer protein VirB9 | VirB9, T4SS component | |
39 | Dd586_2673 | 3005132..3006373 [+], 1242 | conjugation TrbI family protein | VirB10, T4SS component | |
40 | Dd586_2674 | 3006366..3006752 [+], 387 | hypothetical protein | ||
41 | Dd586_2675 | 3006683..3007690 [-], 1008 | conserved hypothetical protein | ||
42 | Dd586_2676 | 3007728..3008747 [+], 1020 | P-type DNA transfer ATPase VirB11 | VirB11, T4SS component | |
43 | Dd586_2677 | 3008744..3009142 [+], 399 | conserved hypothetical protein | ||
44 | Dd586_2678 | 3009188..3009490 [+], 303 | KikA from plasmid origin; putative exported protein | ||
45 | Dd586_2679 | 3009540..3009845 [+], 306 | conserved hypothetical protein | ||
46 | Dd586_2681 | 3010556..3012415 [+], 1860 | putative MobB mobilization protein | VirD4, T4SS component | |
47 | Dd586_2682 | 3012425..3013171 [+], 747 | mobilization protein | ||
48 | Dd586_2683 | 3013367..3014314 [-], 948 | domain of unknown function DUF1738 | ||
49 | Dd586_2684 | 3014599..3016797 [-], 2199 | helicase domain protein | ||
50 | Dd586_2685 | 3016841..3018469 [-], 1629 | conserved hypothetical protein | ||
51 | Dd586_2686 | 3019385..3020161 [-], 777 | short-chain dehydrogenase/reductase SDR | ||
52 | Dd586_2687 | 3020192..3020485 [-], 294 | Stress responsive alpha-beta barrel domain protein | ||
53 | Dd586_2688 | 3020496..3021557 [-], 1062 | Alcohol dehydrogenase zinc-binding domain protein | ||
54 | Dd586_2689 | 3021707..3022666 [+], 960 | transcriptional regulator, LysR family | ||
55 | Dd586_2690 | 3023663..3024925 [+], 1263 | glycosyl transferase family 28 | ||
56 | Dd586_2691 | 3025156..3026919 [+], 1764 | gamma-glutamyltransferase |
Flanking regions |
Identified as part of this study from CP001836 |