oriTDB

The information of the oriT region

oriTDB accession number	200013
Name	oriT_ ICEKp1
Sequence Completeness	intact
oriT length	250 nt
oriT sequence	GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGC GACCAACCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTA AACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGGACGACGGTGTGCCGCCTTTGACCC TGGGGGTTTTGGCGTGGCGTCCAGCCGCGACATTACCCCCATGCACCGGGCAATAAGGGC GTCCAGCCCG
IR (inverted repeat)	[1-11] [158-168] nt (GCACACCGTCG.. CGACGGTGTGC) [57-75] [131-149] nt (GCGCGACCAACCCCTTTAA..TTAAAGGGGTTGGTCGCGC)
Location of nic site	[142-143] nt
Conserved sequence flanking the nic site	GGTTG\|GTCGCG
Note	_
	L:1-11;R:158-168;L:57-75;R:131-149;D:142-143

Visualization of oriT structure (The oriT was characterized experimentally)

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GCACACCGTCGCAGCCAGGCTATATTTCCCGCCCCGGCGGGGAATATGCCGATTAGGCGC

61

GACCAACCCCTTTAAAGCAGCGTTCCCATTTTTTCGAGCTTGCGAAGAAAAAATAGGCTA

121

AACGCGCGTCTTAAAGGGGTTGGTCGCGCGTAGCGGACGACGGTGTGCCGCCTTTGACCC

181

TGGGGGTTTTGGCGTGGCGTCCAGCCGCGACATTACCCCCATGCACCGGGCAATAAGGGC

241

GTCCAGCCCG

Reference

[1] Lin TL et al (2008) Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess. J Bacteriol. 190(2):515-26. [PMID:17981959]

N/A

Information of mobile element

ID	18
Element type	high-pathogenicity island
ICE description	ICEKp1
ICEberg accesion number	126
GenBank accession number	AB298504.1
Family	ICEKp1
Genome size	75935 bp
Coordinate of oriT [+/-]	66386..66635 [+]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	high-pathogenicity island
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 [484021]

Reference

[1] Lin TL et al (2008) Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess. J Bacteriol. 190(2):515-26. [PMID:17981959]