ICEberg ID | 1053 |
Name | ICEVchCHN1944 |
Organism | Vibrio cholerae ICDC-1944 |
Size (bp) | 100703 |
GC content [Genome] (%) | 47.45 |
Insertion site | - |
Function | Antibiotic resistance genes: sul2, strAB, dhfR, folR |
Species that ICE can be transferred to | - |
Nucleotide Sequence | KT151659 (complete ICE sequence in this GenBank file) |
Replicon | - |
Coordinates | 1..100703 |
Putative oriT region | coordinates: 94813..94919; oriTDB id: 200056 TTCCCCATCCAATTAACCCCTAAAGCCAAAACCACTATCCGTTTGGCTTTTGGATCGAAACGCCAAACGT AAAACTGCCGTCACAATCACTGTTTGGCGTCTCGATA |
Putative relaxase | coordinates: 51458..53608; Gene: traI; Family: MOBH |
The graph information of ICEVchCHN1944 components from KT151659 | |||||
Complete gene list of ICEVchCHN1944 from KT151659 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | setR | 325..972 [-], 648 | SetR | ||
2 | - | 1090..1341 [+], 252 | hypothetical protein | ||
3 | - | 1397..2266 [+], 870 | hypothetical protein | ||
4 | - | 2253..2915 [+], 663 | hypothetical protein | ||
5 | - | 2902..3450 [+], 549 | hypothetical protein | Orf169_F, T4SS component | |
6 | setD | 3447..3746 [+], 300 | SetD | ||
7 | setC | 3743..4276 [+], 534 | SetC | ||
8 | eexR1 | 4334..4765 [+], 432 | EexR1 | ||
9 | traG | 4798..8367 [-], 3570 | plasmid conjugative transfer protein | TraG_F, T4SS component | |
10 | traH | 8371..9759 [-], 1389 | plasmid conjugative transfer pilus assembly protein trah | TraH_F, T4SS component | |
11 | traF | 9762..10706 [-], 945 | plasmid conjugative transfer pilus assembly protein traf | TraF_F, T4SS component | |
12 | pcrA | 10994..12886 [-], 1893 | ATP-dependent DNA helicase | ||
13 | - | 12883..14847 [-], 1965 | putative ATP-dependent OLD family endonuclease | ||
14 | - | 15021..15197 [-], 177 | hypothetical protein | ||
15 | - | 15355..16062 [-], 708 | hypothetical protein | ||
16 | - | 16152..17225 [-], 1074 | phage P4 alpha zinc-binding domain protein | ||
17 | - | 17317..17658 [-], 342 | hypothetical protein | ||
18 | - | 17658..18155 [-], 498 | DNA repair protein | ||
19 | - | 18238..19893 [-], 1656 | cobalamin biosynthesis protein | ||
20 | - | 19963..20403 [-], 441 | hypothetical protein | ||
21 | - | 20465..21418 [-], 954 | hypothetical protein | ||
22 | - | 21517..22284 [-], 768 | hypothetical protein | ||
23 | - | 22284..23360 [-], 1077 | hypothetical protein | ||
24 | - | 23453..24469 [-], 1017 | hypothetical protein | ||
25 | - | 24530..24673 [-], 144 | hypothetical protein | ||
26 | bet | 24757..25575 [-], 819 | recombination protein BET | ||
27 | ssb | 25655..26074 [-], 420 | single-stranded DNA-binding protein | ||
28 | - | 26090..26416 [-], 327 | hypothetical protein | ||
29 | - | 26419..26547 [+], 129 | hypothetical protein | ||
30 | - | 26784..27386 [+], 603 | hypothetical protein | ||
31 | dna | 27495..28169 [+], 675 | extracellular deoxyribonuclease dns | ||
32 | - | 28234..28752 [-], 519 | plasmid-related regulatory protein | ||
33 | - | 28772..31045 [-], 2274 | plasmid-related membrane protein | ||
34 | traN | 31545..35237 [-], 3693 | plasmid conjugative transfer protein | TraN_F, T4SS component | |
35 | traU | 35240..36268 [-], 1029 | plasmid conjugative transfer pilus assembly protein trau | TraU_F, T4SS component | |
36 | traW | 36252..37376 [-], 1125 | plasmid conjugative transfer pilus assembly protein traw | TraW_F, T4SS component | |
37 | trhF | 37387..37899 [-], 513 | conjugative signal peptidase | TraF, T4SS component | |
38 | - | 37883..38230 [-], 348 | hypothetical protein | ||
39 | traC | 38223..40622 [-], 2400 | plasmid conjugative transfer pilus assembly protein trac | TraC_F, T4SS component | |
40 | - | 40622..41314 [-], 693 | thiol:disulfide protein | TrbB_I, T4SS component | |
41 | ync | 41446..42384 [-], 939 | ync | ||
42 | ynd | 42377..43210 [-], 834 | ynd | ||
43 | traA | 43388..43774 [-], 387 | conjugative transfer protein | TraA_F, T4SS component | |
44 | traV | 43771..44421 [-], 651 | conjugative transfer protein | TraV_F, T4SS component | |
45 | traB | 44418..45707 [-], 1290 | plasmid conjugative transfer pilus assembly protein trab | TraB_F, T4SS component | |
46 | traK | 45710..46606 [-], 897 | plasmid conjugative transfer pilus assembly protein trak | TraK_F, T4SS component | |
47 | traE | 46590..47216 [-], 627 | plasmid conjugative transfer pilus assembly protein trae | TraE_F, T4SS component | |
48 | traL | 47213..47494 [-], 282 | plasmid conjugative transfer pilus assembly protein tral | TraL_F, T4SS component | |
49 | - | 47783..48370 [+], 588 | plasmid relative protein | ||
50 | - | 48397..49032 [-], 636 | conjugative transfer protein | ||
51 | - | 49019..49579 [-], 561 | conjugative transfer protein | ||
52 | traD | 49589..51409 [-], 1821 | plasmid conjugative transfer protein | TraD_F, T4SS component | |
53 | traI | 51458..53608 [-], 2151 | conjugative transfer protein relaxase | Relaxase, MOBH Family | |
54 | - | 53730..53894 [+], 165 | hypothetical protein | ||
55 | - | 53857..55992 [-], 2136 | putative DNA helicase | TraI_F, T4SS component | |
56 | - | 55998..62420 [-], 6423 | helicase | ||
57 | - | 62613..67583 [-], 4971 | type II restriction enzyme methylase subunit | ||
58 | - | 67586..70513 [-], 2928 | putative ATP-dependent helicase | ||
59 | - | 70540..71463 [-], 924 | hypothetical protein | ||
60 | - | 71781..72080 [-], 300 | hypothetical protein | ||
61 | - | 72168..73073 [-], 906 | DNA polymerase III epsilon subunit-like protein | ||
62 | - | 73456..73713 [-], 258 | hypothetical protein | ||
63 | umuD | 73712..74161 [+], 450 | error-prone repair protein | ||
64 | rumB | 74169..74438 [+], 270 | RumB | ||
65 | - | 74591..75313 [+], 723 | hypothetical protein | ||
66 | tnpA | 74781..76394 [-], 1614 | transposase | ||
67 | - | 76674..76856 [+], 183 | BstXI | ||
68 | sul2 | 76865..77680 [+], 816 | dihydropteroate synthase | AR | |
69 | strA | 77741..78544 [+], 804 | streptomycin phosphotransferase | AR | |
70 | strB | 78544..79380 [+], 837 | streptomycin phosphotransferase | AR | |
71 | tnpB | 79352..79891 [-], 540 | putative transposase | ||
72 | - | 80003..80308 [-], 306 | helix-turn-helix multiple antibiotic resistance protein | ||
73 | - | 80336..81550 [-], 1215 | bicyclomycin resistance protein | AR | |
74 | - | 81767..82651 [-], 885 | hypothetical protein | ||
75 | tnp | 82682..83605 [-], 924 | transposase | ||
76 | dhfR | 84142..84648 [-], 507 | dihydrofolate reductase | ||
77 | tnp | 85000..85923 [-], 924 | transposase | ||
78 | dhfR | 86460..86966 [-], 507 | dihydrofolate reductase | ||
79 | tnpB | 87318..88241 [-], 924 | transposase | ||
80 | tnpA | 89229..92207 [-], 2979 | transposase | ||
81 | tnp | 92321..92914 [-], 594 | transposase | ||
82 | umuC | 93198..94370 [+], 1173 | error-prone lesion bypass DNA polymerase V | ||
83 | - | 94847..94981 [-], 135 | hypothetical protein | ||
84 | - | 95026..95193 [-], 168 | hypothetical protein | ||
85 | - | 95289..96263 [+], 975 | hypothetical protein | ||
86 | - | 96266..96535 [+], 270 | hypothetical protein | ||
87 | int | 96537..97778 [+], 1242 | integrase-like protein | Integrase | |
88 | mutL | 97908..99926 [-], 2019 | DNA mismatch repair protein | ||
89 | - | 100559..100687 [-], 129 | hypothetical protein |
(1) Wang R; Yu D; Yue J; Kan B (2016). Variations in SXT elements in epidemic Vibrio cholerae O1 El Tor strains in China. Sci Rep. 6:22733. [PubMed:26956038] |
in silico analysis literature |