ICEberg ID | 1035 |
Name | ICEPvuCHN2213 |
ICEO ID | ICEO_0000252 |
Organism | Proteus vulgaris 08MAS2213 |
Size (bp) | 94,340 |
GC content [Genome] (%) | 46.77 |
Insertion site | - |
Function | Resistance to ampicillin, azithromycin, chloramphenicol, cefazolin, ampicillin-sulbactam, streptomycin, trimethoprim-sulfamethoxazole, sulfamethoxazole |
Species that ICE can be transferred to | - |
Nucleotide Sequence | KX243403 (complete ICE sequence in this GenBank file) |
Replicon | - |
Coordinates | 1..94340 |
Putative oriT region | coordinates: 5816..5922; oriTDB id: 200056 TATCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGA TAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAA |
Putative relaxase | coordinates: 39812..41962; Gene: traI; Family: MOBH |
The graph information of ICEPvuCHN2213 components from KX243403 | |||||
Complete gene list of ICEPvuCHN2213 from KX243403 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | - | 475..663 [+], 189 | hypothetical protein | ||
2 | mutL | 809..2827 [+], 2019 | DNA mismatch repair protein MutL | ||
3 | int | 2957..4198 [-], 1242 | integrase | Integrase | |
4 | - | 4200..4469 [-], 270 | hypothetical protein | ||
5 | - | 4472..5446 [-], 975 | Rod shape determination protein | ||
6 | - | 5542..5709 [+], 168 | hypothetical protein | ||
7 | - | 5754..5888 [+], 135 | hypothetical protein | ||
8 | - | 5911..6354 [+], 444 | hypothetical protein | ||
9 | rumB | 6365..7537 [-], 1173 | Error-prone, lesion bypass DNA polymerase V (UmuC) | ||
10 | tnp | 7821..8414 [+], 594 | Transposase | ||
11 | tnpA | 8528..11506 [+], 2979 | Transposase | ||
12 | tnpB | 11924..13417 [+], 1494 | Transposase | ||
13 | dfhR | 13769..14275 [+], 507 | Dihydrofolate reductase | ||
14 | tnpB | 14740..15735 [+], 996 | Transposase | ||
15 | - | 15886..16650 [+], 765 | Type IV secretory pathway, VirD2 components | ||
16 | floR | 16867..18081 [+], 1215 | Bicyclomycin resistance protein | AR | |
17 | - | 18109..18414 [+], 306 | LysR family transcriptional regulator | ||
18 | tnpB | 18526..19065 [+], 540 | Transposase | ||
19 | strB | 19037..19867 [-], 831 | streptomycin phosphotransferase | AR | |
20 | strA | 19873..20439 [-], 567 | streptomycin phosphotransferase | ||
21 | sul2 | 20737..21552 [-], 816 | Dihydropteroate synthase | AR | |
22 | tnpA | 22023..23636 [+], 1614 | Transposase | ||
23 | rumB | 23979..24248 [-], 270 | Error-prone, lesion bypass DNA polymerase V (UmuC) | ||
24 | rumA | 24256..24705 [-], 450 | Error-prone repair protein UmuD | ||
25 | - | 24662..24961 [+], 300 | hypothetical protein | ||
26 | - | 25344..26249 [+], 906 | DNA polymerase III | ||
27 | - | 26337..26636 [+], 300 | hypothetical protein | ||
28 | - | 26958..27908 [+], 951 | hypothetical protein | ||
29 | - | 27917..29632 [+], 1716 | Type I restriction-modification system, DNA-methyltransferase subunit M | ||
30 | - | 29625..30329 [+], 705 | Type I restriction-modification system, specificity subunit S | ||
31 | - | 30326..31480 [+], 1155 | hypothetical protein | ||
32 | - | 31485..34649 [+], 3165 | Type I restriction-modification system, restriction subunit R | ||
33 | - | 34665..36863 [+], 2199 | enzyme | ||
34 | - | 36863..37990 [+], 1128 | putative mcrC protein | ||
35 | - | 37990..38844 [+], 855 | Mrr restriction system protein | ||
36 | - | 38938..39219 [+], 282 | hypothetical protein | ||
37 | - | 39219..39692 [+], 474 | hypothetical protein | ||
38 | traI | 39812..41962 [+], 2151 | Conjugative transfer protein TraI, relaxase | Relaxase, MOBH Family | |
39 | traD | 42011..43831 [+], 1821 | IncF plasmid conjugative transfer protein TraD | TraD_F, T4SS component | |
40 | - | 43841..44401 [+], 561 | Conjugative transfer protein 234 | ||
41 | - | 44388..45023 [+], 636 | Conjugative transfer protein s043 | ||
42 | - | 45295..46851 [+], 1557 | Mobile element protein | ||
43 | - | 47016..47264 [+], 249 | hypothetical protein | ||
44 | - | 47224..48495 [+], 1272 | hypothetical protein | ||
45 | - | 48571..49266 [+], 696 | Mobile element protein | ||
46 | - | 49345..49917 [-], 573 | hypothetical protein | ||
47 | traL | 50206..50487 [+], 282 | IncF plasmid conjugative transfer pilus assembly protein TraL | TraL_F, T4SS component | |
48 | traE | 50484..51110 [+], 627 | IncF plasmid conjugative transfer pilus assembly protein TraE | TraE_F, T4SS component | |
49 | traK | 51094..51990 [+], 897 | IncF plasmid conjugative transfer pilus assembly protein TraK | TraK_F, T4SS component | |
50 | traB | 51993..53282 [+], 1290 | IncF plasmid conjugative transfer pilus assembly protein TraB | TraB_F, T4SS component | |
51 | traV | 53279..53929 [+], 651 | Conjugative transfer protein TraV | TraV_F, T4SS component | |
52 | traA | 53926..54312 [+], 387 | Conjugative transfer protein TraA | TraA_F, T4SS component | |
53 | ynd | 54490..55323 [+], 834 | Ynd | ||
54 | ync | 55316..56254 [+], 939 | Ync | ||
55 | - | 56386..57078 [+], 693 | Thiol:disulfide involved in conjugative transfer | TrbB_I, T4SS component | |
56 | traC | 57078..59477 [+], 2400 | IncF plasmid conjugative transfer pilus assembly protein TraC | TraC_F, T4SS component | |
57 | - | 59470..59817 [+], 348 | Conjugative transfer protein 345 | ||
58 | trhF | 59801..60313 [+], 513 | Conjugative signal peptidase TrhF | TraF, T4SS component | |
59 | traW | 60324..61448 [+], 1125 | IncF plasmid conjugative transfer pilus assembly protein TraW | TraW_F, T4SS component | |
60 | traU | 61432..62460 [+], 1029 | IncF plasmid conjugative transfer pilus assembly protein TraU | TraU_F, T4SS component | |
61 | traN | 62463..66155 [+], 3693 | IncF plasmid conjugative transfer protein TraN | TraN_F, T4SS component | |
62 | - | 66387..66719 [+], 333 | hypothetical protein | ||
63 | - | 66750..67412 [+], 663 | hypothetical protein | ||
64 | - | 67503..68105 [-], 603 | hypothetical protein | ||
65 | - | 68473..68799 [+], 327 | hypothetical protein | ||
66 | ssb | 68815..69234 [+], 420 | Single-stranded DNA-binding protein | ||
67 | bet | 69314..70132 [+], 819 | Recombination protein BET | ||
68 | - | 70214..70357 [+], 144 | hypothetical protein | ||
69 | - | 70418..71434 [+], 1017 | hypothetical protein | ||
70 | - | 71632..72603 [+], 972 | Aerobic cobaltochelatase CobS subunit | ||
71 | - | 72606..73370 [+], 765 | hypothetical protein | ||
72 | - | 73469..74422 [+], 954 | Cobalamine biosynthesis protein | ||
73 | - | 74484..74924 [+], 441 | hypothetical protein | ||
74 | - | 74994..76649 [+], 1656 | Plasmid associated gene product | ||
75 | - | 76733..77230 [+], 498 | DNA repair protein RadC | ||
76 | - | 77230..77571 [+], 342 | hypothetical protein | ||
77 | - | 77662..78735 [+], 1074 | putative primase | ||
78 | - | 78825..79532 [+], 708 | hypothetical protein | ||
79 | - | 79635..81632 [-], 1998 | hypothetical protein | ||
80 | - | 81623..82114 [-], 492 | hypothetical protein | ||
81 | - | 82137..83291 [-], 1155 | hypothetical protein | ||
82 | traF | 83640..84584 [+], 945 | IncF plasmid conjugative transfer pilus assembly protein TraF | TraF_F, T4SS component | |
83 | traH | 84587..85975 [+], 1389 | IncF plasmid conjugative transfer pilus assembly protein TraH | TraH_F, T4SS component | |
84 | traG | 85979..89548 [+], 3570 | IncF plasmid conjugative transfer protein TraG | TraG_F, T4SS component | |
85 | eexS | 89581..90036 [-], 456 | EexS | ||
86 | setC | 90070..90603 [-], 534 | Transcriptional activator | ||
87 | setD | 90600..90899 [-], 300 | Transcriptional activator | ||
88 | - | 90896..91444 [-], 549 | Soluble lytic murein transglycosylase and related regulatory proteins | Orf169_F, T4SS component | |
89 | - | 91431..92093 [-], 663 | hypothetical protein | ||
90 | - | 92080..92949 [-], 870 | hypothetical protein | ||
91 | - | 93005..93256 [-], 252 | hypothetical protein | ||
92 | setR | 93374..94021 [+], 648 | Putative cI prophage repressor protein |
(1) Li X; Du Y; Du P; Dai H; Fang Y; Li Z; Lv N; Zhu B; Kan B; Wang D (2016). SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance. Sci Rep. 6:37372. [PubMed:27892525] |
experimental literature |
in silico analysis literature |