ICEberg ID | 1033 |
Name | ICEPmiCHN905 |
Organism | Proteus mirabilis MD20140905 |
Size (bp) | 94,956 |
GC content [Genome] (%) | 47.76 |
Insertion site | - |
Function | Resistance to ampicillin, azithromycin, aztreonam, amikacin, chloramphenicol, cefuroxime, cefazolin, ceftriaxone, ciprofloxacin, gentamycin, ampicillin-sulbactam, kanamycin, streptomycin, trimethoprim-sulfamethoxazole, sulfamethoxazole, tetracycline |
Species that ICE can be transferred to | - |
Nucleotide Sequence | KX243412 (complete ICE sequence in this GenBank file) |
Replicon | - |
Coordinates | 1..94956 |
Putative oriT region | coordinates: 3685..3791; oriTDB id: 200056 TATCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGCCAAACGGA TAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAA |
Putative relaxase | coordinates: 37767..39917; Gene: traI; Family: MOBH |
The graph information of ICEPmiCHN905 components from KX243412 | |||||
Complete gene list of ICEPmiCHN905 from KX243412 | |||||
# | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | *Reannotation | |
1 | - | 127..270 [-], 144 | hypothetical protein | ||
2 | - | 615..809 [+], 195 | hypothetical protein | ||
3 | int | 826..2067 [-], 1242 | integrase | Integrase | |
4 | - | 2069..2338 [-], 270 | hypothetical protein | ||
5 | - | 2341..3315 [-], 975 | Rod shape determination protein | ||
6 | - | 3411..3578 [+], 168 | hypothetical protein | ||
7 | - | 3623..3757 [+], 135 | hypothetical protein | ||
8 | - | 3780..4223 [+], 444 | hypothetical protein | ||
9 | rumB | 4234..5406 [-], 1173 | Error-prone, lesion bypass DNA polymerase V (UmuC) | ||
10 | tnp | 5690..6283 [+], 594 | Transposase | ||
11 | tnpA | 6397..9375 [+], 2979 | Transposase | ||
12 | tnpB | 9793..11286 [+], 1494 | Transposase | ||
13 | - | 11482..12201 [+], 720 | Type IV secretory pathway, VirD2 components | ||
14 | floR | 12418..13632 [+], 1215 | Bicyclomycin resistance protein | AR | |
15 | - | 13660..13965 [+], 306 | LysR family transcriptional regulator | ||
16 | tnpB | 14077..14616 [+], 540 | Transposase | ||
17 | strB | 14588..15418 [-], 831 | streptomycin phosphotransferase | AR | |
18 | strA | 15424..16227 [-], 804 | streptomycin phosphotransferase | AR | |
19 | sul2 | 16288..17103 [-], 816 | Dihydropteroate synthase | AR | |
20 | tnpA | 17574..18662 [+], 1089 | Transposase | ||
21 | - | 18693..19742 [-], 1050 | hypothetical protein | ||
22 | - | 20128..20991 [-], 864 | Beta-lactamase | ||
23 | - | 21022..21153 [+], 132 | hypothetical protein | ||
24 | - | 21367..21495 [+], 129 | hypothetical protein | ||
25 | - | 22210..23115 [+], 906 | DNA polymerase III | ||
26 | - | 23203..23502 [+], 300 | hypothetical protein | ||
27 | - | 23820..24800 [+], 981 | hypothetical protein | ||
28 | - | 24809..26524 [+], 1716 | Type I restriction-modification system, DNA-methyltransferase subunit M | ||
29 | - | 26517..27221 [+], 705 | Type I restriction-modification system, specificity subunit S | ||
30 | - | 27218..28372 [+], 1155 | hypothetical protein | ||
31 | - | 28377..31541 [+], 3165 | Type I restriction-modification system, restriction subunit R | ||
32 | - | 31557..32543 [+], 987 | hypothetical protein | ||
33 | tnp | 32557..33477 [-], 921 | Mobile element protein | ||
34 | - | 33607..34818 [+], 1212 | enzyme | ||
35 | - | 34818..35945 [+], 1128 | putative mcrC protein | ||
36 | mrr | 35945..36799 [+], 855 | Mrr restriction system protein | ||
37 | - | 36893..37174 [+], 282 | hypothetical protein | ||
38 | - | 37174..37647 [+], 474 | hypothetical protein | ||
39 | traI | 37767..39917 [+], 2151 | Conjugative transfer protein TraI, relaxase | Relaxase, MOBH Family | |
40 | traD | 39966..41786 [+], 1821 | IncF plasmid conjugative transfer protein TraD | TraD_F, T4SS component | |
41 | - | 41796..42356 [+], 561 | Conjugative transfer protein 234 | ||
42 | - | 42343..42978 [+], 636 | Conjugative transfer protein s043 | ||
43 | - | 43005..43592 [-], 588 | hypothetical protein | ||
44 | traL | 43881..44162 [+], 282 | IncF plasmid conjugative transfer pilus assembly protein TraL | TraL_F, T4SS component | |
45 | traE | 44159..44785 [+], 627 | IncF plasmid conjugative transfer pilus assembly protein TraE | TraE_F, T4SS component | |
46 | traK | 44769..45665 [+], 897 | IncF plasmid conjugative transfer pilus assembly protein TraK | TraK_F, T4SS component | |
47 | traB | 45668..46957 [+], 1290 | IncF plasmid conjugative transfer pilus assembly protein TraB | TraB_F, T4SS component | |
48 | traV | 47032..47604 [+], 573 | Conjugative transfer protein TraV | TraV_F, T4SS component | |
49 | traA | 47601..47987 [+], 387 | Conjugative transfer protein TraA | TraA_F, T4SS component | |
50 | ynd | 48166..48999 [+], 834 | Ynd | ||
51 | ync | 48992..49930 [+], 939 | Ync | ||
52 | - | 50062..50754 [+], 693 | Thiol:disulfide involved in conjugative transfer | TrbB_I, T4SS component | |
53 | traC | 50754..53153 [+], 2400 | IncF plasmid conjugative transfer pilus assembly protein TraC | TraC_F, T4SS component | |
54 | - | 53146..53493 [+], 348 | Conjugative transfer protein 345 | ||
55 | trhF | 53477..53989 [+], 513 | Conjugative signal peptidase TrhF | TraF, T4SS component | |
56 | traW | 54000..55124 [+], 1125 | IncF plasmid conjugative transfer pilus assembly protein TraW | TraW_F, T4SS component | |
57 | traU | 55156..56136 [+], 981 | IncF plasmid conjugative transfer pilus assembly protein TraU | TraU_F, T4SS component | |
58 | traN | 56139..59831 [+], 3693 | IncF plasmid conjugative transfer protein TraN | TraN_F, T4SS component | |
59 | - | 60290..61708 [+], 1419 | hypothetical protein | ||
60 | herA | 61705..63744 [+], 2040 | Bipolar DNA helicase HerA | ||
61 | - | 63990..64103 [+], 114 | hypothetical protein | ||
62 | dns | 64153..64866 [-], 714 | Endonuclease I precursor | ||
63 | - | 64869..65321 [-], 453 | Il-IS_2, transposase | ||
64 | - | 66070..66582 [-], 513 | Lipoprotein signal peptidase | ||
65 | - | 66586..67365 [-], 780 | Cobalt-zinc-cadmium resistance protein CzcD | ||
66 | merR | 67578..67985 [+], 408 | Cd(II)/Pb(II)-responsive transcriptional regulator | ||
67 | - | 68139..68261 [+], 123 | hypothetical protein | ||
68 | - | 68273..68494 [-], 222 | hypothetical protein | ||
69 | - | 68491..68769 [-], 279 | Resolvase | ||
70 | - | 69035..69163 [+], 129 | Type IV secretory pathway, VirB4 components | Tfc16, T4SS component | |
71 | tetA | 69219..70316 [-], 1098 | Tetracycline efflux protein TetA | AR | |
72 | - | 70299..70439 [+], 141 | hypothetical protein | ||
73 | tetR | 70502..71161 [+], 660 | tetracycline repressor protein | ||
74 | - | 72135..72737 [-], 603 | hypothetical protein | ||
75 | - | 73104..73430 [+], 327 | hypothetical protein | ||
76 | ssb | 73446..73865 [+], 420 | Single-stranded DNA-binding protein | ||
77 | bet | 73945..74763 [+], 819 | Recombination protein BET | ||
78 | - | 74846..74989 [+], 144 | hypothetical protein | ||
79 | - | 75050..76066 [+], 1017 | hypothetical protein | ||
80 | - | 76276..77235 [+], 960 | Aerobic cobaltochelatase CobS subunit | ||
81 | - | 77235..78002 [+], 768 | hypothetical protein | ||
82 | - | 78101..79054 [+], 954 | Cobalamine biosynthesis protein | ||
83 | - | 79116..79556 [+], 441 | hypothetical protein | ||
84 | - | 79626..81281 [+], 1656 | Plasmid associated gene product | ||
85 | - | 81364..81861 [+], 498 | DNA repair protein RadC | ||
86 | - | 81861..82202 [+], 342 | hypothetical protein | ||
87 | - | 82294..83367 [+], 1074 | putative primase | ||
88 | - | 83457..84161 [+], 705 | hypothetical protein | ||
89 | traF | 84254..85198 [+], 945 | IncF plasmid conjugative transfer pilus assembly protein TraF | TraF_F, T4SS component | |
90 | traH | 85201..86589 [+], 1389 | IncF plasmid conjugative transfer pilus assembly protein TraH | TraH_F, T4SS component | |
91 | traG | 86593..90162 [+], 3570 | IncF plasmid conjugative transfer protein TraG | TraG_F, T4SS component | |
92 | eexS | 90195..90650 [-], 456 | EexS | ||
93 | setC | 90684..91217 [-], 534 | Transcriptional activator | ||
94 | setD | 91214..91513 [-], 300 | Transcriptional activator | ||
95 | - | 91510..92058 [-], 549 | Soluble lytic murein transglycosylase and related regulatory proteins | Orf169_F, T4SS component | |
96 | - | 92045..92707 [-], 663 | hypothetical protein | ||
97 | - | 92694..93563 [-], 870 | hypothetical protein | ||
98 | - | 93619..93870 [-], 252 | hypothetical protein | ||
99 | setR | 93988..94635 [+], 648 | Putative cI prophage repressor protein |
(1) Li X; Du Y; Du P; Dai H; Fang Y; Li Z; Lv N; Zhu B; Kan B; Wang D (2016). SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance. Sci Rep. 6:37372. [PubMed:27892525] |
experimental literature |
in silico analysis literature |