ICEberg
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Organism: Vibrio cholerae O1 Ind5
#IDICE nameICE familyReplicon
122 experimental ICEVchInd5 [ICEVchHai1]SXT/R391-
experimental Data derived from experimental literature
The genome map is not available as this strain has not been completely sequenced.
ElementNo. of sequencesDownloadAlignment
ICEs1Fasta-
Proteins96FastaProtein
(1) Carraro N; Rivard N; Ceccarelli D; Colwell RR; Burrus V (2016). IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti. MBio. 7(4). [PudMed:27435459]
(2) Sjolund-Karlsson M; Reimer A; Folster JP; Walker M; Dahourou GA; Batra DG; Martin I; Joyce K; Parsons MB; Boncy J; Whichard JM; Gilmour MW (2011). Drug-resistance mechanisms in Vibrio cholerae O1 outbreak strain, Haiti, 2010. Emerg Infect Dis. 17(11):2151-4. [PudMed:22099122]
(3) Spagnoletti M; Ceccarelli D; Colombo MM (2012). Rapid detection by multiplex PCR of Genomic Islands, prophages and Integrative Conjugative Elements in V. cholerae 7th pandemic variants. J Microbiol Methods. 88(1):98-102. [PudMed:22062086] experimental
(4) Ceccarelli D; Spagnoletti M; Bacciu D; Danin-Poleg Y; Mendiratta DK; Kashi Y; Cappuccinelli P; Burrus V; Colombo MM (2011). ICEVchInd5 is prevalent in epidemic Vibrio cholerae O1 El Tor strains isolated in India. Int J Med Microbiol. 301(4):318-24. [PudMed:21276749] experimental
(5) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(6) Bordeleau E; Brouillette E; Robichaud N; Burrus V (2010). Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol. 12(2):510-23. [PudMed:19888998] experimental
 
experimental experimental literature
in_silico in silico analysis literature