Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hicAB/HicA-HicB |
Location | 316521..317134 | Replicon | chromosome |
Accession | NZ_CP027722 | ||
Organism | Pseudomonas chlororaphis subsp. aureofaciens strain C50 |
Toxin (Protein)
Gene name | hicA | Uniprot ID | A0A285EYZ4 |
Locus tag | C4K11_RS01385 | Protein ID | WP_009041685.1 |
Coordinates | 316521..316703 (+) | Length | 61 a.a. |
Antitoxin (Protein)
Gene name | hicB | Uniprot ID | A0A554PT90 |
Locus tag | C4K11_RS01390 | Protein ID | WP_009046450.1 |
Coordinates | 316733..317134 (+) | Length | 134 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C4K11_RS01360 | 311704..313668 | + | 1965 | WP_164485207.1 | choline transporter BetT | - |
C4K11_RS01365 | 313781..314038 | - | 258 | WP_009046444.1 | hypothetical protein | - |
C4K11_RS01370 | 314091..314579 | - | 489 | WP_124354496.1 | DoxX family protein | - |
C4K11_RS01375 | 314636..315376 | - | 741 | WP_016702555.1 | SDR family oxidoreductase | - |
C4K11_RS01380 | 315506..316396 | + | 891 | WP_041985374.1 | LysR family transcriptional regulator | - |
C4K11_RS01385 | 316521..316703 | + | 183 | WP_009041685.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
C4K11_RS01390 | 316733..317134 | + | 402 | WP_009046450.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
C4K11_RS01395 | 317704..318741 | + | 1038 | WP_016702559.1 | L-glyceraldehyde 3-phosphate reductase | - |
C4K11_RS01400 | 318872..319300 | - | 429 | WP_023970008.1 | type II toxin-antitoxin system VapC family toxin | - |
C4K11_RS01405 | 319297..319542 | - | 246 | WP_016702561.1 | plasmid stabilization protein | - |
C4K11_RS01410 | 319682..320521 | - | 840 | WP_124354497.1 | taurine dioxygenase | - |
C4K11_RS01415 | 320757..321596 | - | 840 | WP_009046455.1 | taurine ABC transporter permease TauC | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6933.08 Da Isoelectric Point: 10.4588
>T99989 WP_009041685.1 NZ_CP027722:316521-316703 [Pseudomonas chlororaphis subsp. aureofaciens]
MRSRELIRMIEEDGWYLIAVKGSHHQYKHLHKPGRVTIPHPDADLPRGTIHSILKQAGLK
MRSRELIRMIEEDGWYLIAVKGSHHQYKHLHKPGRVTIPHPDADLPRGTIHSILKQAGLK
Download Length: 183 bp
>T99989 NZ_CP027722:316521-316703 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGCGCAGTCGGGAACTGATCAGGATGATCGAGGAGGACGGGTGGTATCTGATCGCGGTCAAAGGCAGTCATCACCAATA
CAAGCATCTGCACAAGCCGGGACGGGTCACTATCCCTCACCCGGATGCGGATCTGCCCAGGGGCACGATCCACAGCATCT
TGAAACAGGCGGGCCTGAAATGA
ATGCGCAGTCGGGAACTGATCAGGATGATCGAGGAGGACGGGTGGTATCTGATCGCGGTCAAAGGCAGTCATCACCAATA
CAAGCATCTGCACAAGCCGGGACGGGTCACTATCCCTCACCCGGATGCGGATCTGCCCAGGGGCACGATCCACAGCATCT
TGAAACAGGCGGGCCTGAAATGA
Antitoxin
Download Length: 134 a.a. Molecular weight: 14596.44 Da Isoelectric Point: 4.9133
>AT99989 WP_009046450.1 NZ_CP027722:316733-317134 [Pseudomonas chlororaphis subsp. aureofaciens]
MKFPVVLHKDADSGYGVIVPDVPGCFSAGHTAAQAFENVKEALSLHYEGLVADGEPLPQVHEVDVHIDNPDYAGGVWGVI
EFDITPYFGKAVRFNATLPEQLLERIDQTVKRDQRYRSRSGFLAAAALRELSA
MKFPVVLHKDADSGYGVIVPDVPGCFSAGHTAAQAFENVKEALSLHYEGLVADGEPLPQVHEVDVHIDNPDYAGGVWGVI
EFDITPYFGKAVRFNATLPEQLLERIDQTVKRDQRYRSRSGFLAAAALRELSA
Download Length: 402 bp
>AT99989 NZ_CP027722:316733-317134 [Pseudomonas chlororaphis subsp. aureofaciens]
ATGAAATTCCCGGTCGTGCTGCACAAGGATGCCGACTCCGGATATGGAGTGATCGTCCCCGATGTGCCGGGCTGTTTTTC
CGCCGGTCATACCGCTGCGCAAGCCTTCGAGAATGTGAAAGAGGCCCTGTCGCTGCATTATGAAGGCCTGGTCGCCGATG
GTGAGCCGCTGCCCCAGGTGCATGAGGTCGACGTGCATATCGACAATCCCGATTACGCCGGTGGCGTGTGGGGCGTGATC
GAGTTCGACATCACGCCTTACTTCGGCAAGGCGGTGCGTTTCAATGCGACGTTGCCGGAGCAACTGTTGGAGCGCATCGA
CCAGACGGTGAAGCGCGACCAGCGCTACCGTTCGCGCTCGGGCTTTCTCGCGGCAGCGGCATTGCGCGAACTCTCCGCCT
AG
ATGAAATTCCCGGTCGTGCTGCACAAGGATGCCGACTCCGGATATGGAGTGATCGTCCCCGATGTGCCGGGCTGTTTTTC
CGCCGGTCATACCGCTGCGCAAGCCTTCGAGAATGTGAAAGAGGCCCTGTCGCTGCATTATGAAGGCCTGGTCGCCGATG
GTGAGCCGCTGCCCCAGGTGCATGAGGTCGACGTGCATATCGACAATCCCGATTACGCCGGTGGCGTGTGGGGCGTGATC
GAGTTCGACATCACGCCTTACTTCGGCAAGGCGGTGCGTTTCAATGCGACGTTGCCGGAGCAACTGTTGGAGCGCATCGA
CCAGACGGTGAAGCGCGACCAGCGCTACCGTTCGCGCTCGGGCTTTCTCGCGGCAGCGGCATTGCGCGAACTCTCCGCCT
AG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A285EYZ4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A554PT90 |