Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PumAB/upstrm_HI1419-dnstrm_HI1420 |
Location | 2373194..2373764 | Replicon | chromosome |
Accession | NZ_CP027718 | ||
Organism | Pseudomonas chlororaphis subsp. aurantiaca strain Q16 |
Toxin (Protein)
Gene name | PumA | Uniprot ID | - |
Locus tag | C4K15_RS10785 | Protein ID | WP_081363241.1 |
Coordinates | 2373486..2373764 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | PumB | Uniprot ID | A0A3G7ICX6 |
Locus tag | C4K15_RS10780 | Protein ID | WP_038580367.1 |
Coordinates | 2373194..2373484 (-) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C4K15_RS10765 | 2368547..2371027 | + | 2481 | WP_124339346.1 | FtsX-like permease family protein | - |
C4K15_RS10770 | 2371017..2372093 | + | 1077 | WP_124337979.1 | iron ABC transporter permease | - |
C4K15_RS10775 | 2372207..2372794 | + | 588 | WP_124308120.1 | hypothetical protein | - |
C4K15_RS10780 | 2373194..2373484 | - | 291 | WP_038580367.1 | putative addiction module antidote protein | Antitoxin |
C4K15_RS10785 | 2373486..2373764 | - | 279 | WP_081363241.1 | addiction module antitoxin RelB | Toxin |
C4K15_RS10790 | 2374013..2375407 | - | 1395 | WP_081362128.1 | VOC family protein | - |
C4K15_RS10795 | 2375669..2376793 | + | 1125 | WP_124337980.1 | diguanylate cyclase | - |
C4K15_RS10800 | 2376887..2378131 | + | 1245 | WP_124337981.1 | M20/M25/M40 family metallo-hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10061.59 Da Isoelectric Point: 11.0291
>T99963 WP_081363241.1 NZ_CP027718:c2373764-2373486 [Pseudomonas chlororaphis subsp. aurantiaca]
MQTTVFAQWHTTLRDLRARIAIARRIERASAGNLGDVKNLGGGLSEMRVNTGAGYRLYFTVRGNPLIVLLLGGDKSSQPA
DICQARSLAKEF
MQTTVFAQWHTTLRDLRARIAIARRIERASAGNLGDVKNLGGGLSEMRVNTGAGYRLYFTVRGNPLIVLLLGGDKSSQPA
DICQARSLAKEF
Download Length: 279 bp
>T99963 NZ_CP027718:c2373764-2373486 [Pseudomonas chlororaphis subsp. aurantiaca]
CTGCAGACGACCGTCTTTGCCCAATGGCACACCACACTACGGGACCTGCGCGCCAGGATAGCCATCGCTCGGCGTATCGA
GCGGGCTTCGGCGGGCAACCTGGGCGATGTGAAAAACCTCGGCGGCGGTCTCTCGGAAATGCGCGTGAACACAGGCGCTG
GCTACCGCCTCTATTTCACGGTTCGCGGCAATCCCCTCATCGTCCTGCTGCTGGGTGGCGACAAGTCCAGCCAGCCTGCC
GATATCTGCCAGGCCCGTTCCCTGGCCAAGGAGTTCTGA
CTGCAGACGACCGTCTTTGCCCAATGGCACACCACACTACGGGACCTGCGCGCCAGGATAGCCATCGCTCGGCGTATCGA
GCGGGCTTCGGCGGGCAACCTGGGCGATGTGAAAAACCTCGGCGGCGGTCTCTCGGAAATGCGCGTGAACACAGGCGCTG
GCTACCGCCTCTATTTCACGGTTCGCGGCAATCCCCTCATCGTCCTGCTGCTGGGTGGCGACAAGTCCAGCCAGCCTGCC
GATATCTGCCAGGCCCGTTCCCTGGCCAAGGAGTTCTGA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10239.78 Da Isoelectric Point: 8.0096
>AT99963 WP_038580367.1 NZ_CP027718:c2373484-2373194 [Pseudomonas chlororaphis subsp. aurantiaca]
MSDTLVPFDIAALLDSDQAISEYLSQVLADGDTDELIRALGHVARARGMTQIAKTTGQGRASLYKAFAPGAKPRFDTVVK
VMRALGLQLCTTVSRG
MSDTLVPFDIAALLDSDQAISEYLSQVLADGDTDELIRALGHVARARGMTQIAKTTGQGRASLYKAFAPGAKPRFDTVVK
VMRALGLQLCTTVSRG
Download Length: 291 bp
>AT99963 NZ_CP027718:c2373484-2373194 [Pseudomonas chlororaphis subsp. aurantiaca]
ATGTCCGACACACTGGTTCCCTTCGACATCGCCGCCCTGCTCGACAGCGACCAGGCGATCAGCGAATACCTGTCCCAGGT
CCTGGCCGATGGCGATACCGACGAACTGATCCGCGCCCTGGGCCACGTCGCCAGGGCCCGGGGCATGACGCAGATTGCCA
AGACCACCGGCCAGGGCCGGGCCAGCCTCTACAAGGCTTTTGCCCCGGGGGCCAAGCCGCGCTTCGATACCGTGGTCAAG
GTCATGCGCGCGCTGGGCCTGCAGCTGTGCACCACCGTGTCCCGAGGCTGA
ATGTCCGACACACTGGTTCCCTTCGACATCGCCGCCCTGCTCGACAGCGACCAGGCGATCAGCGAATACCTGTCCCAGGT
CCTGGCCGATGGCGATACCGACGAACTGATCCGCGCCCTGGGCCACGTCGCCAGGGCCCGGGGCATGACGCAGATTGCCA
AGACCACCGGCCAGGGCCGGGCCAGCCTCTACAAGGCTTTTGCCCCGGGGGCCAAGCCGCGCTTCGATACCGTGGTCAAG
GTCATGCGCGCGCTGGGCCTGCAGCTGTGCACCACCGTGTCCCGAGGCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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