Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2812757..2813028 | Replicon | chromosome |
| Accession | NZ_CP027701 | ||
| Organism | Escherichia coli strain 675SK2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2812795..2812898 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2812757..2813028 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYU58_RS14465 | 2809914..2811353 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CYU58_RS14470 | 2811471..2811707 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CYU58_RS14475 | 2811812..2812003 | + | 192 | WP_000457842.1 | YebW family protein | - |
| CYU58_RS14480 | 2812004..2812660 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2812757..2813028 | + | 272 | - | - | Antitoxin |
| - | 2812795..2812898 | - | 104 | - | - | Toxin |
| CYU58_RS14485 | 2813056..2813397 | - | 342 | WP_000976476.1 | YebY family protein | - |
| CYU58_RS14490 | 2813410..2814282 | - | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| CYU58_RS14495 | 2814286..2814660 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CYU58_RS14500 | 2814799..2815029 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CYU58_RS14505 | 2815131..2815787 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CYU58_RS14510 | 2815811..2816473 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99859 NZ_CP027701:c2812898-2812795 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99859 NZ_CP027701:2812757-2813028 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
