Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4565307..4565459 | Replicon | chromosome |
| Accession | NZ_CP027618 | ||
| Organism | Enterobacter cloacae complex sp. FDA-CDC-AR_0132 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4565321..4565424 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4565307..4565459 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM379_RS22145 | 4561581..4563023 | + | 1443 | WP_032678423.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM379_RS22150 | 4563129..4563368 | + | 240 | WP_020883412.1 | YebV family protein | - |
| AM379_RS22155 | 4563403..4564047 | - | 645 | WP_032678424.1 | protein-serine/threonine phosphatase | - |
| AM379_RS22160 | 4564215..4565156 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| - | 4565307..4565459 | + | 153 | - | - | Antitoxin |
| - | 4565321..4565424 | - | 104 | - | - | Toxin |
| AM379_RS22165 | 4565563..4565901 | - | 339 | WP_014170622.1 | YebY family protein | - |
| AM379_RS22170 | 4565918..4566787 | - | 870 | WP_032678425.1 | copper homeostasis membrane protein CopD | - |
| AM379_RS22175 | 4566789..4567160 | - | 372 | WP_032678426.1 | CopC domain-containing protein YobA | - |
| AM379_RS22180 | 4567298..4567528 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| AM379_RS22185 | 4567638..4568288 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| AM379_RS22190 | 4568313..4568975 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99786 NZ_CP027618:c4565424-4565321 [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT99786 NZ_CP027618:4565307-4565459 [Enterobacter cloacae complex sp. FDA-CDC-AR_0132]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
