Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966473..1966744 | Replicon | chromosome |
| Accession | NZ_CP027591 | ||
| Organism | Escherichia coli strain 2014C-3011 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966603..1966706 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966473..1966744 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7A05_RS11695 | 1963028..1963690 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C7A05_RS11700 | 1963714..1964370 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C7A05_RS11705 | 1964472..1964702 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7A05_RS11710 | 1964841..1965215 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C7A05_RS11715 | 1965219..1966091 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C7A05_RS11720 | 1966104..1966445 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1966473..1966744 | - | 272 | - | - | Antitoxin |
| - | 1966603..1966706 | + | 104 | - | - | Toxin |
| C7A05_RS11725 | 1966841..1967497 | + | 657 | WP_000812722.1 | protein-serine/threonine phosphatase | - |
| C7A05_RS11730 | 1967498..1967689 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C7A05_RS11735 | 1967794..1968030 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7A05_RS11740 | 1968148..1969587 | - | 1440 | WP_024226338.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99686 NZ_CP027591:1966603-1966706 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99686 NZ_CP027591:c1966744-1966473 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
