Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1283243..1283514 | Replicon | chromosome |
| Accession | NZ_CP027587 | ||
| Organism | Escherichia coli strain 2013C-4974 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1283373..1283476 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1283243..1283514 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6998_RS07075 | 1279798..1280460 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6998_RS07080 | 1280484..1281140 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6998_RS07085 | 1281242..1281472 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6998_RS07090 | 1281611..1281985 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6998_RS07095 | 1281989..1282861 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6998_RS07100 | 1282874..1283215 | + | 342 | WP_097453198.1 | YebY family protein | - |
| - | 1283243..1283514 | - | 272 | - | - | Antitoxin |
| - | 1283373..1283476 | + | 104 | - | - | Toxin |
| C6998_RS07105 | 1283611..1284267 | + | 657 | WP_000812722.1 | protein-serine/threonine phosphatase | - |
| C6998_RS07110 | 1284268..1284459 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6998_RS07115 | 1284564..1284800 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6998_RS07120 | 1284918..1286357 | - | 1440 | WP_106878525.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99650 NZ_CP027587:1283373-1283476 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99650 NZ_CP027587:c1283514-1283243 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
