Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1756647..1756918 | Replicon | chromosome |
| Accession | NZ_CP027584 | ||
| Organism | Escherichia coli strain 00-3076 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1756685..1756788 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1756647..1756918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7A02_RS09380 | 1753804..1755243 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C7A02_RS09385 | 1755361..1755597 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C7A02_RS09390 | 1755702..1755893 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C7A02_RS09395 | 1755894..1756550 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1756647..1756918 | + | 272 | - | - | Antitoxin |
| - | 1756685..1756788 | - | 104 | - | - | Toxin |
| C7A02_RS09400 | 1756946..1757287 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C7A02_RS09405 | 1757300..1758171 | - | 872 | Protein_1725 | copper homeostasis membrane protein CopD | - |
| C7A02_RS09410 | 1758175..1758549 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C7A02_RS09415 | 1758688..1758918 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C7A02_RS09420 | 1759020..1759675 | + | 656 | Protein_1728 | carbon-nitrogen hydrolase family protein | - |
| C7A02_RS09425 | 1759699..1760361 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99603 NZ_CP027584:c1756788-1756685 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99603 NZ_CP027584:1756647-1756918 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
