Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 971762..971996 | Replicon | chromosome |
| Accession | NZ_CP027582 | ||
| Organism | Escherichia coli strain 2013C-4538 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 971892..971995 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 971762..971996 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6999_RS05035 | 968317..968979 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6999_RS05040 | 969003..969659 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6999_RS05045 | 969761..969991 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6999_RS05050 | 970130..970504 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6999_RS05055 | 970508..971380 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6999_RS05060 | 971393..971734 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 971762..971996 | - | 235 | - | - | Antitoxin |
| - | 971892..971995 | + | 104 | - | - | Toxin |
| C6999_RS05065 | 972127..973203 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| C6999_RS05070 | 973169..973450 | - | 282 | WP_001443927.1 | excisionase | - |
| C6999_RS05075 | 973557..973745 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 973561..973739 | + | 179 | NuclAT_1 | - | - |
| - | 973561..973739 | + | 179 | NuclAT_1 | - | - |
| - | 973561..973739 | + | 179 | NuclAT_1 | - | - |
| - | 973561..973739 | + | 179 | NuclAT_1 | - | - |
| C6999_RS05080 | 973738..973932 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6999_RS05085 | 973989..974798 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 964352..1034677 | 70325 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99568 NZ_CP027582:971892-971995 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT99568 NZ_CP027582:c971996-971762 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
