Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2285943..2286423 Replicon chromosome
Accession NZ_CP027561
Organism Pseudomonas fluorescens strain G7

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C6Y56_RS10240 Protein ID WP_134020806.1
Coordinates 2285943..2286236 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag C6Y56_RS10245 Protein ID WP_085712084.1
Coordinates 2286217..2286423 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6Y56_RS10200 2281237..2281710 + 474 WP_169429739.1 type II secretion system GspH family protein -
C6Y56_RS10205 2281716..2282090 + 375 WP_169429740.1 type II secretion system GspH family protein -
C6Y56_RS10210 2282065..2282604 + 540 WP_169429741.1 type II secretion system GspH family protein -
C6Y56_RS10215 2282601..2282993 + 393 WP_169429742.1 curli production assembly/transport protein CsgE -
C6Y56_RS10220 2282990..2283419 + 430 Protein_2003 curli production assembly protein CsgF -
C6Y56_RS10225 2283448..2284308 + 861 WP_115077264.1 curli production assembly/transport protein CsgG -
C6Y56_RS10230 2285218..2285598 + 381 WP_169429743.1 hypothetical protein -
C6Y56_RS10235 2285671..2285862 + 192 WP_169429744.1 antitoxin -
C6Y56_RS10240 2285943..2286236 - 294 WP_134020806.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C6Y56_RS10245 2286217..2286423 - 207 WP_085712084.1 antitoxin Antitoxin
C6Y56_RS10250 2286690..2288141 - 1452 WP_169429745.1 curlin -
C6Y56_RS10255 2288168..2288632 - 465 WP_169429746.1 curlin -
C6Y56_RS10260 2288702..2290936 - 2235 WP_169429747.1 cadherin-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11537.47 Da        Isoelectric Point: 11.6992

>T99466 WP_134020806.1 NZ_CP027561:c2286236-2285943 [Pseudomonas fluorescens]
MVSRSIEWRPEARAKLMLIIDFITERHPRAARELVRAIGKAASNLLEHPRLYRTGRIPGTREAVVHSSYLIIYRVTDRIE
IVNVLHTRQEYPRRRFF

Download         Length: 294 bp

>T99466 NZ_CP027561:c2286236-2285943 [Pseudomonas fluorescens]
ATGGTTTCGAGGTCGATTGAGTGGAGGCCCGAAGCACGGGCCAAGCTGATGCTAATTATCGACTTCATAACAGAAAGACA
TCCCAGAGCAGCCAGAGAGCTCGTCAGGGCGATTGGAAAAGCTGCATCCAACCTTCTGGAACATCCTCGCCTCTATCGAA
CCGGTCGGATCCCCGGCACTCGAGAAGCTGTTGTACATTCGAGTTATCTGATCATCTATCGGGTTACTGATCGAATAGAA
ATCGTGAACGTACTGCACACGCGTCAGGAGTACCCGCGACGTCGTTTTTTCTAG

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7577.45 Da        Isoelectric Point: 4.0057

>AT99466 WP_085712084.1 NZ_CP027561:c2286423-2286217 [Pseudomonas fluorescens]
MIDPSLIDPLCPVVSDLGPEEQAASYDRWFRAEVQASLDDPRPNISHDQVMAEIHALLKAKDNGFEVD

Download         Length: 207 bp

>AT99466 NZ_CP027561:c2286423-2286217 [Pseudomonas fluorescens]
ATGATCGACCCGTCTTTGATCGACCCACTGTGCCCGGTTGTTTCGGATCTTGGTCCTGAAGAACAGGCTGCGAGTTATGA
CCGTTGGTTTCGCGCCGAAGTACAGGCCTCTCTTGATGATCCGCGTCCGAATATTTCGCATGACCAGGTGATGGCTGAGA
TACATGCCTTGCTCAAGGCAAAAGACAATGGTTTCGAGGTCGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References