Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1297702..1297970 Replicon chromosome
Accession NZ_CP027550
Organism Escherichia coli strain 2015C-4136CT1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1297740..1297842 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1297702..1297970 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6950_RS06885 1294943..1296382 + 1440 WP_001313925.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C6950_RS06890 1296500..1296736 + 237 WP_001295499.1 DUF1480 family protein -
C6950_RS06895 1296841..1296948 + 108 WP_106878859.1 DUF1482 family protein -
C6950_RS06900 1296949..1297605 - 657 WP_001357783.1 protein-serine/threonine phosphatase -
- 1297702..1297970 + 269 - - Antitoxin
- 1297740..1297842 - 103 - - Toxin
C6950_RS06905 1298000..1298341 - 342 WP_001357782.1 YebY family protein -
C6950_RS06910 1298354..1299226 - 873 WP_001357781.1 copper homeostasis membrane protein CopD -
C6950_RS06915 1299230..1299604 - 375 WP_000168747.1 CopC domain-containing protein YobA -
C6950_RS06920 1299743..1299973 + 231 WP_000916763.1 DNA polymerase III subunit theta -
C6950_RS06925 1300075..1300731 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
C6950_RS06930 1300755..1301417 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T99365 NZ_CP027550:c1297842-1297740 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT99365 NZ_CP027550:1297702-1297970 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References