Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5440136..5440407 | Replicon | chromosome |
| Accession | NZ_CP027544 | ||
| Organism | Escherichia coli strain 2013C-3264 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5440266..5440369 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5440136..5440407 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ68_RS29330 | 5436691..5437353 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MJ68_RS29335 | 5437377..5438033 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| MJ68_RS29340 | 5438135..5438365 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MJ68_RS29345 | 5438504..5438878 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MJ68_RS29350 | 5438882..5439754 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| MJ68_RS29355 | 5439767..5440108 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 5440136..5440407 | - | 272 | - | - | Antitoxin |
| - | 5440266..5440369 | + | 104 | - | - | Toxin |
| MJ68_RS29360 | 5440504..5441160 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| MJ68_RS29365 | 5441161..5441352 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MJ68_RS29370 | 5441457..5441693 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MJ68_RS29375 | 5441811..5443250 | - | 1440 | WP_001443441.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99292 NZ_CP027544:5440266-5440369 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99292 NZ_CP027544:c5440407-5440136 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
