Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3061394..3061662 | Replicon | chromosome |
| Accession | NZ_CP027534 | ||
| Organism | Escherichia coli strain AR_0081 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3061522..3061624 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3061394..3061662 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM460_RS15760 | 3057947..3058609 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM460_RS15765 | 3058633..3059289 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM460_RS15770 | 3059391..3059621 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM460_RS15775 | 3059760..3060134 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM460_RS15780 | 3060138..3061010 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM460_RS15785 | 3061023..3061364 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3061394..3061662 | - | 269 | - | - | Antitoxin |
| - | 3061522..3061624 | + | 103 | - | - | Toxin |
| AM460_RS15790 | 3061759..3062415 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| AM460_RS15795 | 3062416..3062607 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM460_RS15800 | 3062712..3062948 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM460_RS15805 | 3063065..3064504 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T99200 NZ_CP027534:3061522-3061624 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT99200 NZ_CP027534:c3061662-3061394 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
