Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 976970..977204 | Replicon | chromosome |
| Accession | NZ_CP027472 | ||
| Organism | Escherichia coli strain 2014C-3050 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 977100..977203 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 976970..977204 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAF93_RS05020 | 973525..974187 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AAF93_RS05025 | 974211..974867 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AAF93_RS05030 | 974969..975199 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AAF93_RS05035 | 975338..975712 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AAF93_RS05040 | 975716..976588 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AAF93_RS05045 | 976601..976942 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 976970..977204 | - | 235 | - | - | Antitoxin |
| - | 977100..977203 | + | 104 | - | - | Toxin |
| AAF93_RS05050 | 977335..978411 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| AAF93_RS05055 | 978377..978658 | - | 282 | WP_001443927.1 | excisionase | - |
| AAF93_RS05060 | 978765..978953 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 978769..978947 | + | 179 | NuclAT_1 | - | - |
| - | 978769..978947 | + | 179 | NuclAT_1 | - | - |
| - | 978769..978947 | + | 179 | NuclAT_1 | - | - |
| - | 978769..978947 | + | 179 | NuclAT_1 | - | - |
| AAF93_RS05065 | 978946..979140 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| AAF93_RS05070 | 979197..980007 | - | 811 | Protein_937 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 971468..1026898 | 55430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99098 NZ_CP027472:977100-977203 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT99098 NZ_CP027472:c977204-976970 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
