Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1862443..1862714 | Replicon | chromosome |
| Accession | NZ_CP027462 | ||
| Organism | Escherichia coli isolate 07-4299 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1862573..1862676 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1862443..1862714 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W75_RS09585 | 1858998..1859660 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W75_RS09590 | 1859684..1860340 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6W75_RS09595 | 1860442..1860672 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W75_RS09600 | 1860811..1861185 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| C6W75_RS09605 | 1861189..1862061 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6W75_RS09610 | 1862074..1862415 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1862443..1862714 | - | 272 | - | - | Antitoxin |
| - | 1862573..1862676 | + | 104 | - | - | Toxin |
| C6W75_RS09615 | 1862811..1863467 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| C6W75_RS09620 | 1863468..1863659 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6W75_RS09625 | 1863764..1864000 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W75_RS09630 | 1864118..1865557 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99078 NZ_CP027462:1862573-1862676 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99078 NZ_CP027462:c1862714-1862443 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
