Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2182085..2182353 Replicon chromosome
Accession NZ_CP027461
Organism Escherichia coli strain 95-3322

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2182123..2182225 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2182085..2182353 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C6W78_RS11770 2179242..2180681 + 1440 WP_024190479.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C6W78_RS11775 2180799..2181035 + 237 WP_001295499.1 DUF1480 family protein -
C6W78_RS11780 2181140..2181331 + 192 WP_001317886.1 YebW family protein -
C6W78_RS11785 2181332..2181988 - 657 WP_000812747.1 protein-serine/threonine phosphatase -
- 2182085..2182353 + 269 - - Antitoxin
- 2182123..2182225 - 103 - - Toxin
C6W78_RS11790 2182383..2182724 - 342 WP_000984819.1 YebY family protein -
C6W78_RS11795 2182737..2183609 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
C6W78_RS11800 2183613..2183987 - 375 WP_000168747.1 CopC domain-containing protein YobA -
C6W78_RS11805 2184126..2184356 + 231 WP_000916763.1 DNA polymerase III subunit theta -
C6W78_RS11810 2184458..2185114 + 657 WP_000011646.1 carbon-nitrogen hydrolase family protein -
C6W78_RS11815 2185138..2185800 + 663 WP_000944249.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T99058 NZ_CP027461:c2182225-2182123 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT99058 NZ_CP027461:2182085-2182353 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References