Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1129447..1129718 | Replicon | chromosome |
| Accession | NZ_CP027459 | ||
| Organism | Escherichia coli strain 90-3040 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1129577..1129680 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1129447..1129718 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W76_RS06145 | 1126002..1126664 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W76_RS06150 | 1126688..1127344 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6W76_RS06155 | 1127446..1127676 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W76_RS06160 | 1127815..1128189 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6W76_RS06165 | 1128193..1129065 | + | 873 | WP_032207804.1 | copper homeostasis membrane protein CopD | - |
| C6W76_RS06170 | 1129078..1129419 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1129447..1129718 | - | 272 | - | - | Antitoxin |
| - | 1129577..1129680 | + | 104 | - | - | Toxin |
| C6W76_RS06175 | 1129815..1130471 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6W76_RS06180 | 1130472..1130663 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6W76_RS06185 | 1130768..1131004 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W76_RS06190 | 1131122..1132559 | - | 1438 | Protein_1136 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99025 NZ_CP027459:1129577-1129680 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99025 NZ_CP027459:c1129718-1129447 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
