Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4724709..4724980 | Replicon | chromosome |
| Accession | NZ_CP027457 | ||
| Organism | Escherichia coli strain 88-3493 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4724747..4724850 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4724709..4724980 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W79_RS23980 | 4721866..4723305 | + | 1440 | WP_024192321.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6W79_RS23985 | 4723423..4723659 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W79_RS23990 | 4723764..4723955 | + | 192 | WP_001338167.1 | YebW family protein | - |
| C6W79_RS23995 | 4723956..4724612 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 4724709..4724980 | + | 272 | - | - | Antitoxin |
| - | 4724747..4724850 | - | 104 | - | - | Toxin |
| C6W79_RS24000 | 4725008..4725349 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C6W79_RS24005 | 4725362..4726234 | - | 873 | WP_032300815.1 | copper homeostasis membrane protein CopD | - |
| C6W79_RS24010 | 4726238..4726612 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6W79_RS24015 | 4726751..4726981 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W79_RS24020 | 4727083..4727739 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| C6W79_RS24025 | 4727763..4728425 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T99008 NZ_CP027457:c4724850-4724747 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT99008 NZ_CP027457:4724709-4724980 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
