Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3672555..3672823 | Replicon | chromosome |
| Accession | NZ_CP027454 | ||
| Organism | Escherichia coli strain 2014C-4423 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3672593..3672696 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3672555..3672823 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W74_RS19495 | 3669712..3671151 | + | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6W74_RS19500 | 3671269..3671505 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W74_RS19505 | 3671610..3671801 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6W74_RS19510 | 3671802..3672458 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3672555..3672823 | + | 269 | - | - | Antitoxin |
| - | 3672593..3672696 | - | 104 | - | - | Toxin |
| C6W74_RS19515 | 3672853..3673194 | - | 342 | WP_000976478.1 | YebY family protein | - |
| C6W74_RS19520 | 3673207..3674079 | - | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| C6W74_RS19525 | 3674083..3674457 | - | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| C6W74_RS19530 | 3674596..3674826 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W74_RS19535 | 3674928..3675584 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6W74_RS19540 | 3675608..3676270 | + | 663 | WP_000944246.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98970 NZ_CP027454:c3672696-3672593 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT98970 NZ_CP027454:3672555-3672823 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
