Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4218028..4218299 | Replicon | chromosome |
| Accession | NZ_CP027449 | ||
| Organism | Escherichia coli strain 2014C-3097 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4218158..4218261 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4218028..4218299 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W73_RS21615 | 4214583..4215245 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W73_RS21620 | 4215269..4215925 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6W73_RS21625 | 4216027..4216257 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W73_RS21630 | 4216396..4216770 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6W73_RS21635 | 4216774..4217646 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6W73_RS21640 | 4217659..4218000 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4218028..4218299 | - | 272 | - | - | Antitoxin |
| - | 4218158..4218261 | + | 104 | - | - | Toxin |
| C6W73_RS21645 | 4218396..4219052 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| C6W73_RS21650 | 4219053..4219244 | - | 192 | WP_001338167.1 | YebW family protein | - |
| C6W73_RS21655 | 4219349..4219585 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W73_RS21660 | 4219703..4221142 | - | 1440 | WP_106879209.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98912 NZ_CP027449:4218158-4218261 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98912 NZ_CP027449:c4218299-4218028 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
