Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1238401..1238672 | Replicon | chromosome |
| Accession | NZ_CP027447 | ||
| Organism | Escherichia coli strain 2014C-3075 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1238439..1238542 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1238401..1238672 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W72_RS06595 | 1235558..1236997 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6W72_RS06600 | 1237115..1237351 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W72_RS06605 | 1237456..1237647 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6W72_RS06610 | 1237648..1238304 | - | 657 | WP_089583405.1 | protein-serine/threonine phosphatase | - |
| - | 1238401..1238672 | + | 272 | - | - | Antitoxin |
| - | 1238439..1238542 | - | 104 | - | - | Toxin |
| C6W72_RS06615 | 1238700..1239041 | - | 342 | WP_000976472.1 | YebY family protein | - |
| C6W72_RS06620 | 1239054..1239926 | - | 873 | WP_096986683.1 | copper homeostasis membrane protein CopD | - |
| C6W72_RS06625 | 1239930..1240304 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| C6W72_RS06630 | 1240443..1240673 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W72_RS06635 | 1240775..1241431 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| C6W72_RS06640 | 1241455..1242117 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98871 NZ_CP027447:c1238542-1238439 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98871 NZ_CP027447:1238401-1238672 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
