Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5162225..5162496 | Replicon | chromosome |
| Accession | NZ_CP027445 | ||
| Organism | Escherichia coli strain 2013C-3492 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5162355..5162458 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5162225..5162496 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W68_RS27535 | 5158781..5159443 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W68_RS27540 | 5159467..5160123 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6W68_RS27545 | 5160225..5160455 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W68_RS27550 | 5160594..5160968 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6W68_RS27555 | 5160972..5161843 | + | 872 | Protein_5030 | copper homeostasis membrane protein CopD | - |
| C6W68_RS27560 | 5161856..5162197 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 5162225..5162496 | - | 272 | - | - | Antitoxin |
| - | 5162355..5162458 | + | 104 | - | - | Toxin |
| C6W68_RS27565 | 5162593..5163249 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6W68_RS27570 | 5163250..5163441 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6W68_RS27575 | 5163546..5163782 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6W68_RS27580 | 5163900..5165337 | - | 1438 | Protein_5035 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98853 NZ_CP027445:5162355-5162458 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98853 NZ_CP027445:c5162496-5162225 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
