Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 5617352..5617990 Replicon chromosome
Accession NZ_CP027442
Organism Escherichia coli strain 2013C-3252

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag MJ69_RS30540 Protein ID WP_000813794.1
Coordinates 5617814..5617990 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag MJ69_RS30535 Protein ID WP_001270286.1
Coordinates 5617352..5617768 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MJ69_RS30515 5612505..5613446 - 942 WP_001251332.1 ABC transporter permease -
MJ69_RS30520 5613447..5614460 - 1014 WP_000220396.1 ABC transporter ATP-binding protein -
MJ69_RS30525 5614478..5615623 - 1146 WP_000047456.1 ABC transporter substrate-binding protein -
MJ69_RS30530 5615868..5617273 - 1406 Protein_5563 PLP-dependent aminotransferase family protein -
MJ69_RS30535 5617352..5617768 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
MJ69_RS30540 5617814..5617990 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
MJ69_RS30545 5618212..5618442 + 231 WP_000494244.1 YncJ family protein -
MJ69_RS30550 5618534..5620495 - 1962 WP_001341357.1 23S rRNA 5-hydroxycytidine C2501 synthase -
MJ69_RS30555 5620568..5621104 - 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
MJ69_RS30560 5621157..5622371 + 1215 WP_001307190.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 5622411..5623559 1148


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T98835 WP_000813794.1 NZ_CP027442:c5617990-5617814 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T98835 NZ_CP027442:c5617990-5617814 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT98835 WP_001270286.1 NZ_CP027442:c5617768-5617352 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT98835 NZ_CP027442:c5617768-5617352 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCGTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAAGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAACTTGCACCATGCGACAAAAATCGACGCCGTCCAGCTTGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References