Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 204717..204985 | Replicon | chromosome |
| Accession | NZ_CP027437 | ||
| Organism | Escherichia coli strain 2012C-4221 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 204844..204947 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 204717..204985 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W65_RS01185 | 201270..201932 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6W65_RS01190 | 201956..202612 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| C6W65_RS01195 | 202714..202944 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6W65_RS01200 | 203083..203457 | + | 375 | WP_106905904.1 | CopC domain-containing protein YobA | - |
| C6W65_RS01205 | 203461..204333 | + | 873 | WP_106905905.1 | copper homeostasis membrane protein CopD | - |
| C6W65_RS01210 | 204346..204687 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 204717..204985 | - | 269 | - | - | Antitoxin |
| - | 204844..204947 | + | 104 | - | - | Toxin |
| C6W65_RS01215 | 205082..205738 | + | 657 | WP_025210567.1 | protein-serine/threonine phosphatase | - |
| C6W65_RS01220 | 205739..205930 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6W65_RS01225 | 206035..206271 | - | 237 | WP_096987357.1 | DUF1480 family protein | - |
| C6W65_RS01230 | 206389..207828 | - | 1440 | WP_106906903.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 197405..220825 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98745 NZ_CP027437:204844-204947 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT98745 NZ_CP027437:c204985-204717 [Escherichia coli]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
