Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3182313..3182581 | Replicon | chromosome |
| Accession | NZ_CP027435 | ||
| Organism | Escherichia coli strain 2014C-3599 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3182351..3182454 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3182313..3182581 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND02_RS16955 | 3179470..3180909 | + | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ND02_RS16960 | 3181027..3181263 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ND02_RS16965 | 3181368..3181559 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ND02_RS16970 | 3181560..3182216 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3182313..3182581 | + | 269 | - | - | Antitoxin |
| - | 3182351..3182454 | - | 104 | - | - | Toxin |
| ND02_RS16975 | 3182611..3182952 | - | 342 | WP_000976478.1 | YebY family protein | - |
| ND02_RS16980 | 3182965..3183837 | - | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| ND02_RS16985 | 3183841..3184215 | - | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| ND02_RS16990 | 3184354..3184584 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ND02_RS16995 | 3184686..3185342 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ND02_RS17000 | 3185366..3186028 | + | 663 | WP_000944246.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98725 NZ_CP027435:c3182454-3182351 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT98725 NZ_CP027435:3182313-3182581 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
