Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4207474..4207745 | Replicon | chromosome |
| Accession | NZ_CP027430 | ||
| Organism | Escherichia coli strain AS19-RrmA- | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4207604..4207707 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4207474..4207745 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P57_RS21620 | 4204030..4204692 | - | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
| C6P57_RS21625 | 4204716..4205372 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| C6P57_RS21630 | 4205474..4205704 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P57_RS21635 | 4205843..4206217 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6P57_RS21640 | 4206221..4207093 | + | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| C6P57_RS21645 | 4207106..4207447 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4207474..4207745 | - | 272 | - | - | Antitoxin |
| - | 4207604..4207707 | + | 104 | - | - | Toxin |
| C6P57_RS21650 | 4207842..4208498 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6P57_RS21655 | 4208499..4208690 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6P57_RS21660 | 4208795..4209031 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P57_RS21665 | 4209149..4210588 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98700 NZ_CP027430:4207604-4207707 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98700 NZ_CP027430:c4207745-4207474 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
