Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4970305..4970450 | Replicon | chromosome |
| Accession | NZ_CP027426 | ||
| Organism | Klebsiella oxytoca strain FDAARGOS_335 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4970312..4970415 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4970305..4970450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ13_RS25015 | 4965578..4966096 | + | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
| CEQ13_RS25020 | 4966114..4966878 | + | 765 | WP_105890448.1 | molecular chaperone | - |
| CEQ13_RS25025 | 4966881..4969214 | + | 2334 | WP_105890449.1 | fimbrial biogenesis outer membrane usher protein | - |
| CEQ13_RS25030 | 4969226..4970185 | + | 960 | WP_004113762.1 | spore coat U domain-containing protein | - |
| - | 4970305..4970450 | + | 146 | - | - | Antitoxin |
| - | 4970312..4970415 | - | 104 | - | - | Toxin |
| CEQ13_RS25035 | 4970572..4970910 | - | 339 | WP_004103344.1 | YebY family protein | - |
| CEQ13_RS25040 | 4970927..4971796 | - | 870 | WP_105890450.1 | copper homeostasis membrane protein CopD | - |
| CEQ13_RS25045 | 4971801..4972175 | - | 375 | WP_105890451.1 | CopC domain-containing protein YobA | - |
| CEQ13_RS25050 | 4972311..4972541 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| CEQ13_RS25055 | 4972620..4973279 | + | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| CEQ13_RS25060 | 4973286..4975346 | - | 2061 | WP_105890452.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98680 NZ_CP027426:c4970415-4970312 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT98680 NZ_CP027426:4970305-4970450 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
