Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 811444..811715 | Replicon | chromosome |
| Accession | NZ_CP027394 | ||
| Organism | Escherichia coli O104:H4 strain FDAARGOS_349 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 811482..811585 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 811444..811715 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ27_RS05065 | 808601..810040 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CEQ27_RS05070 | 810158..810394 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CEQ27_RS05075 | 810499..810690 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CEQ27_RS05080 | 810691..811347 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 811444..811715 | + | 272 | - | - | Antitoxin |
| - | 811482..811585 | - | 104 | - | - | Toxin |
| CEQ27_RS05085 | 811743..812084 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CEQ27_RS05090 | 812097..812969 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CEQ27_RS05095 | 812973..813347 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CEQ27_RS05100 | 813486..813716 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CEQ27_RS05105 | 813818..814474 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CEQ27_RS05110 | 814498..815160 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98602 NZ_CP027394:c811585-811482 [Escherichia coli O104:H4]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98602 NZ_CP027394:811444-811715 [Escherichia coli O104:H4]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
