Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4278389..4278623 | Replicon | chromosome |
| Accession | NZ_CP027387 | ||
| Organism | Escherichia coli strain 2014C-3057 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4278519..4278622 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4278389..4278623 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P73_RS22650 | 4274944..4275606 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P73_RS22655 | 4275630..4276286 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P73_RS22660 | 4276388..4276618 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P73_RS22665 | 4276757..4277131 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6P73_RS22670 | 4277135..4278007 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P73_RS22675 | 4278020..4278361 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4278389..4278623 | - | 235 | - | - | Antitoxin |
| - | 4278519..4278622 | + | 104 | - | - | Toxin |
| C6P73_RS22680 | 4278714..4279829 | - | 1116 | WP_001189092.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| C6P73_RS22685 | 4279795..4280076 | - | 282 | WP_001443927.1 | excisionase | - |
| C6P73_RS22690 | 4280183..4280371 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 4280187..4280365 | + | 179 | NuclAT_1 | - | - |
| - | 4280187..4280365 | + | 179 | NuclAT_1 | - | - |
| - | 4280187..4280365 | + | 179 | NuclAT_1 | - | - |
| - | 4280187..4280365 | + | 179 | NuclAT_1 | - | - |
| C6P73_RS22695 | 4280364..4280558 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6P73_RS22700 | 4280615..4281424 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 4272887..4343866 | 70979 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98505 NZ_CP027387:4278519-4278622 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT98505 NZ_CP027387:c4278623-4278389 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
