Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995209..1995480 | Replicon | chromosome |
| Accession | NZ_CP027380 | ||
| Organism | Escherichia coli strain 2013C-3250 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995339..1995442 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995209..1995480 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYN27_RS10920 | 1991764..1992426 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AYN27_RS10925 | 1992450..1993106 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AYN27_RS10930 | 1993208..1993438 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AYN27_RS10935 | 1993577..1993951 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AYN27_RS10940 | 1993955..1994827 | + | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| AYN27_RS10945 | 1994840..1995181 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1995209..1995480 | - | 272 | - | - | Antitoxin |
| - | 1995339..1995442 | + | 104 | - | - | Toxin |
| AYN27_RS10950 | 1995577..1996233 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AYN27_RS10955 | 1996234..1996425 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AYN27_RS10960 | 1996530..1996766 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AYN27_RS10965 | 1996884..1998323 | - | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98467 NZ_CP027380:1995339-1995442 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98467 NZ_CP027380:c1995480-1995209 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
