Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4172263..4172534 | Replicon | chromosome |
| Accession | NZ_CP027373 | ||
| Organism | Escherichia coli strain 05-3629 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4172393..4172496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4172263..4172534 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P66_RS21460 | 4168818..4169480 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P66_RS21465 | 4169504..4170160 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P66_RS21470 | 4170262..4170492 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P66_RS21475 | 4170631..4171005 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6P66_RS21480 | 4171009..4171881 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P66_RS21485 | 4171894..4172235 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4172263..4172534 | - | 272 | - | - | Antitoxin |
| - | 4172393..4172496 | + | 104 | - | - | Toxin |
| C6P66_RS21490 | 4172631..4173287 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6P66_RS21495 | 4173288..4173479 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6P66_RS21500 | 4173584..4173820 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P66_RS21505 | 4173938..4175377 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98439 NZ_CP027373:4172393-4172496 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98439 NZ_CP027373:c4172534-4172263 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
