Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2016537..2016808 | Replicon | chromosome |
| Accession | NZ_CP027371 | ||
| Organism | Escherichia coli strain 2015C-3905 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2016575..2016678 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2016537..2016808 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P67_RS10775 | 2013694..2015133 | + | 1440 | WP_106879209.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6P67_RS10780 | 2015251..2015487 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P67_RS10785 | 2015592..2015783 | + | 192 | WP_001338167.1 | YebW family protein | - |
| C6P67_RS10790 | 2015784..2016440 | - | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| - | 2016537..2016808 | + | 272 | - | - | Antitoxin |
| - | 2016575..2016678 | - | 104 | - | - | Toxin |
| C6P67_RS10795 | 2016836..2017177 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6P67_RS10800 | 2017190..2018062 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P67_RS10805 | 2018066..2018440 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6P67_RS10810 | 2018579..2018809 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P67_RS10815 | 2018911..2019567 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P67_RS10820 | 2019591..2020253 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98406 NZ_CP027371:c2016678-2016575 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98406 NZ_CP027371:2016537-2016808 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
