Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5173466..5173734 | Replicon | chromosome |
| Accession | NZ_CP027362 | ||
| Organism | Escherichia coli strain 95-3192 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5173593..5173696 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5173466..5173734 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P51_RS27085 | 5170019..5170681 | - | 663 | WP_000944252.1 | exodeoxyribonuclease X | - |
| C6P51_RS27090 | 5170705..5171361 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C6P51_RS27095 | 5171463..5171693 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P51_RS27100 | 5171832..5172206 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C6P51_RS27105 | 5172210..5173082 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| C6P51_RS27110 | 5173095..5173436 | + | 342 | WP_000976475.1 | YebY family protein | - |
| - | 5173466..5173734 | - | 269 | - | - | Antitoxin |
| - | 5173593..5173696 | + | 104 | - | - | Toxin |
| C6P51_RS27115 | 5173831..5174487 | + | 657 | WP_000812714.1 | protein-serine/threonine phosphatase | - |
| C6P51_RS27120 | 5174488..5174679 | - | 192 | WP_001313035.1 | YebW family protein | - |
| C6P51_RS27125 | 5174784..5175020 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P51_RS27130 | 5175138..5176577 | - | 1440 | WP_024221588.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98338 NZ_CP027362:5173593-5173696 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT98338 NZ_CP027362:c5173734-5173466 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
