Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1840153..1840424 | Replicon | chromosome |
| Accession | NZ_CP027347 | ||
| Organism | Escherichia coli strain 2013C-4361 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1840191..1840294 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1840153..1840424 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AZF34_RS10135 | 1837310..1838749 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AZF34_RS10140 | 1838867..1839103 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AZF34_RS10145 | 1839208..1839399 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AZF34_RS10150 | 1839400..1840056 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1840153..1840424 | + | 272 | - | - | Antitoxin |
| - | 1840191..1840294 | - | 104 | - | - | Toxin |
| AZF34_RS10155 | 1840452..1840793 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AZF34_RS10160 | 1840806..1841678 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| AZF34_RS10165 | 1841682..1842056 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AZF34_RS10170 | 1842195..1842425 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AZF34_RS10175 | 1842527..1843183 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AZF34_RS10180 | 1843207..1843869 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98163 NZ_CP027347:c1840294-1840191 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98163 NZ_CP027347:1840153-1840424 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
